Protein Info for Shewana3_1996 in Shewanella sp. ANA-3

Annotation: phage integrase family protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 369 PF00589: Phage_integrase" amino acids 170 to 366 (197 residues), 59.6 bits, see alignment E=1.8e-20

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_1996)

Predicted SEED Role

"integrase family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KWQ8 at UniProt or InterPro

Protein Sequence (369 amino acids)

>Shewana3_1996 phage integrase family protein (RefSeq) (Shewanella sp. ANA-3)
MSKSIIHYSTGGSAPSRSSDMASNITASDKQIDSPFFEESSLPQSVHSDFFNAAAETEYE
ISINTRRVYRTSFGLFEQYCATHQLQSLPADPRSIISFIGHQKELLQASSGTQLSKQTLT
TRLAAIRYYHIQAGFPSPTEHPLVIRVMRGLSRNHHRQVQDYDQQPIMYDEVELLIQAIE
QQPHPLLRSRDKAIIQLGLQGGFRRSELANLKVQYLSFMRDKLKVRLPFSKSNQQGLREW
KNLPDSEPFAAYNAVKDWLNESKITEGHLFRSISRDGKTLRPYQISDNVTSKSSLIRNSG
FLNGDDIYRIIKQYCLKAGLPAQYYGAHSLRSGCVTQLHENNKDTLYIMARTGHTDPRSL
RHYLKPKED