Protein Info for Shewana3_1845 in Shewanella sp. ANA-3

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1068 transmembrane" amino acids 49 to 68 (20 residues), see Phobius details PF11739: YdbH-like" amino acids 57 to 1067 (1011 residues), 430.6 bits, see alignment E=1.2e-132

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_1845)

Predicted SEED Role

"Putative uncharacterized protein ydbH"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KWA7 at UniProt or InterPro

Protein Sequence (1068 amino acids)

>Shewana3_1845 hypothetical protein (RefSeq) (Shewanella sp. ANA-3)
MVNTPTSPNQETAEHSHQAMPQEATAAAAPHSAASRRGSTLKKRLKQSLIATTVAGLLAG
AALTIWIVNSQTEALILRVANYALSGMDGELSDIRLGPMGLEHWHIRSASLRVHDSHLVI
NNLDIQLELNWPKSLEELKQLVQVESLTQKIKRISTGEIDVELGASLLERSPTIADEQTP
ALALNIKSLPLIDIGKTTLRLAPQAELPAYQLVMDKLSLNHQGELTTAFSSPEGEPLVQL
AATLGNEQWRLKSELNIAPLLENLHQIGLRQTQGSILSQLTLWDQQWQQLGIGLSGQLSS
ESTMTLASGEITSRHRIQQPNISLSHFADLTLAPQPALGFELSGSLASLNLTLEPFSLAL
TPNAAQHTQLLAALNQSLQLNDENSQALLTLLSGLKSTEAPVGLGFSMTAPLHYALTSQA
SPHKPIALPAIELTTLGCKLETRIHLQETQLTPTPDAWNVASRWQLALKQTSPLTLRDLW
HVAPQDLSWGAGMLQTAGQVSVAQSAQGLNWQVSTAPVTSDSSDSSDTLQFALEDVQLQQ
TAQAAEHQTKQTQLSLGSIQLNAKSPLAASATPLATQDTTGAQSTEFAFKLPPLSLALSQ
LRVSQAVENLAGNNSTATAIQSSRNDISLKAFSLETSKPMTLDYSSLQSIVNTIQSSQLT
NQVNWQAQQLLIEKQLSAKGRTRKQTVLKLDNLTLAQTLNWQNQRLHGHEQWQVGKVALQ
SDHQLQFAAPHKPLLLTGQWVVDTSMTEALSLLNQTQPLPAELNVTGHNQLQAQFKLTHE
PEQTQFAMQITQSMTELEGFYQDTTFEGGKLQAQCEFTWGQSYKSPQAPGYFSSLSRLNC
PQTMMTFNLFDPGFPLTDIEVEADIVLAKDAEKLPDNWLQQLTGLSDTDVSMTAKGKVLS
GQFLLPDFNLKLQDKSHAYLLLQGMSLEEVLRIQPQIGIYADGIFDGVLPVDLVDGKVSI
SGGQLAARAPGGLIAISGNPAVDQMRQSQPYLDFVFSALEHLEYSQLSSSFDMDQTGDAN
LLVEVKGRSRGIERPIHLNYSHEENMLQLFRSLQIGNDLQDRIEKSVK