Protein Info for Shewana3_1825 in Shewanella sp. ANA-3

Annotation: ATPase-like protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

No protein families (PFam or TIGRFam), signal peptides, or transmembrane helices were found in this protein.

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_1825)

Predicted SEED Role

"Bipolar DNA helicase HerA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KW89 at UniProt or InterPro

Protein Sequence (1065 amino acids)

>Shewana3_1825 ATPase-like protein (RefSeq) (Shewanella sp. ANA-3)
MSQEVITKFSDSIVGRSNILQHISCMPNPQFAQLPLSFPSSSLKLLRAEEINDENPSAYR
LALANVYAALEHEDQIQFIYLLDVSLEGVALYFGVNQLTSAIDGPGHESLKNLRGALEGQ
LPGINLSRLEGIEPLMARLQASKHKGVVLGIPTGKSQDQDSNEEDYQGIERLVRTLLSGS
GSDSGSINSANWQMVVVTQPLTRKDARVYLDDAYELASELSIQVKTSVQAGSNNNEQKGN
SFSEGTSDSTNTGRTDTRGKNDGVSQSKNIGKSSNDNSSSNHSSGTSSCDTQGKNWGTNT
SVADTKGSSHSTSINETYNLNRSAGSNIGLTKEVTDKRAQHLLDHIEKSLIPRLQKGVTK
GLFGTAIYLAADTPSSYRRLKNTVCSTYQGGEITVSPLEVVDLNETSAAQLLQLPTLKQS
LNYRNSLFHSITSSHESQFATLLTCDELAMVAGLPRHELPGLRRRKTVEFIVDLPRVKAD
DALKLGAVIDRGRKQHTNSINLNKADFNKHIFVTGVTGAGKTTTCLNLLIESALPFLVIE
PAKTEYRALHQHMPNQVAYYRPNGDQHRSLRLNPFALVHPKQHIRSHASFLRNVFAAIFP
MEASMPFLVEQAIVRAYEEKGWDLTDNTCFCCDDPFAPAAQAWPTMGDMIRQLDQLIPEQ
GMGKEFEEKYRGSLVSRLTSLTHGVLGDILNVPQSLKVNALLDNKVVIELEEIKDGEGKA
LMMALLLGAVSEAIRYRHGKDSTFRHLTLIEEAHRLLAKPEPGDKARAMAVDAFADLLAE
VRKYGEGLIIADQIPAKLVADVIKNTHIKIVHRLFAEDDRRAMGEAMMMDEAQRDYLPNL
ATGEAVIFCGGWHGPAHGAIRADLAQTDGDPLSEDDINQLAVNQLWQERARYYPALTHLG
WLTQEEQKLSFADFVRTGRKALNILLELTPSILGTSSITELKQLKLSEALIQWLEKWQPI
AALNPVNQDEWSRGANLPLPTHPFTVLLLALMKDCHPTLRTKSKTNAIWPFPATDLAIWS
EGLSTMLNTLATSTATEVINKLNAAKSSSRECQKVLQQLSFYQKF