Protein Info for Shewana3_1785 in Shewanella sp. ANA-3
Annotation: glutamate dehydrogenase (NAD) (RefSeq)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K00260, glutamate dehydrogenase [EC: 1.4.1.2] (inferred from 62% identity to aha:AHA_2288)Predicted SEED Role
"NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form" in subsystem Glutamate dehydrogenases or Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis (EC 1.4.1.2)
MetaCyc Pathways
- L-alanine degradation II (to D-lactate) (3/3 steps found)
- L-glutamate degradation I (1/1 steps found)
- ethene biosynthesis IV (engineered) (1/3 steps found)
- L-glutamate degradation V (via hydroxyglutarate) (5/10 steps found)
- 4-aminobutanoate degradation V (2/7 steps found)
- L-glutamate degradation XI (reductive Stickland reaction) (2/7 steps found)
- methylaspartate cycle (9/19 steps found)
KEGG Metabolic Maps
Isozymes
No predicted isozymesUse Curated BLAST to search for 1.4.1.2
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0KW49 at UniProt or InterPro
Protein Sequence (1614 amino acids)
>Shewana3_1785 glutamate dehydrogenase (NAD) (RefSeq) (Shewanella sp. ANA-3) MALKDAMPSVLLENVVSLIHAKVPNSQAKQVEQFATCLYAHMSKDDLNARNDSDLYGAVL SLWNALNKTPKGETHLRVFNPSQSKHGWQSTHSIIEVIQPDMPFLVDSVGMALNRMGITA HMMLHTPLAIERSAQDVTKVTYLNQSPDSTEHVAVFLIEIDRQSSSVDIKALEREIQSVL GDVAASVNDWSAMSAKLSETIKELPKRPFPGEKQELEEAINFLTYLNNHHFTLLGYRQYD LKRVEGDVELVPNMASSLGLMNKHHKTQPEQGLLLSSFSDSARKEALDHSLLILTKSSAK SRVHRPAYVDYIGIKRFDKKGNVVGEDRFIGLYASNVYNRSPREIPLLNEKVQRVLDRSG LTPRSHDYKALLNILENLPRDELIQANVDDLAHTAHGVLEMQDRDKLKLFVRKDGFGRFL SCLVYVSKDRYNTKLRQDTQRILAQHFNSKEDVEFTTYFSESTLARTHYIVKVDNNNMDV DVAAIENNLIEAARSWEDKLNTALNTALGEEAGTHLMKRYANAFEQSYKEDVLPSSAVVD MQQLEALDDEHKLGMLFYQPQEAALNDNKVRLKLFHKDEPIHLSDVLPMLENFGLRVINE RPYEVTTSDGSTFWILDFLMTVKVTNTDNIADSQDRFQTALSQVWQKKLEDDGFNRIILA SGLTGREVSVLRAYAKYMRQIDATFSQAYIEETFGRYPQIADLLVKMFIRKFNPKLKTRT LGKFMEQINLRLDEVSSLDDDRIIRRYLDLINATLRTNFYQLDAKGESKSYISFKFMPSL IPEMPRPLPKFEIFVYSPRVEGVHLRYGKVARGGLRWSDRREDFRTEVLGLVKAQQVKNT VIVPVGAKGGFVCKQLPTEGGREAFFTEGQECYRIFIRALLDITDNIVNGEIVHPVDVVR HDEDDPYLVVAADKGTATFSDIANAISQEYNFWLGDAFASGGSNGYDHKKMGITARGGWE SVKRHFREVGIDCQTTDFSCLGIGDMAGDVFGNGMLLSKHTKLVAAFNHMHIFVDPNPDT AASYEERARLFALPRSTWEDYNSKLISKGGGIFLRSSKSIPLSAEMKQMLETEKTSMTPT ELMKELLKMPVDLIWNGGIGTYVKSSRETHAEVGDRANDALRVNGRELRAKIVGEGGNLG CTQLGRIEYAANGGRINTDFVDNVGGVDCSDNEVNIKILLNALVAEGELTLKQRNRLLEE MTEEVGQIVLQDCKDQTRTISVTQVRGAEQLKEQIRFIQYLEKEGKLDRALEFLPSEEEL AERLANGRALTRPELSVLVAYAKMVLKEQLLTQEITEDTLLSQLLIAYFPKQLQELYSHR MVTHPLRGEIIATSLANELVNDMGLNFVQRMQDETGASVADAAICYTMAREVFGLAELTK AITDLNGIVPAVVQGEMLHQLRRNMRRACRWFLRHRNRTWSIEQTVAFFKPVFEQIKANV HSYLVEEEAAGIQAEINALIKENVPQEVATVVANMSTLFSALDIAQIAQAEEKTVELVAE TYFKLGARVELHWFLEQISAQPVANHWQALARAAFREELDWQQRALTSVVLRTCSETCDA QSVISQWIDTNQALLERWFHMLADFKTSQSHEFAKFSVALRELNLLILHCEGHK