Protein Info for Shewana3_1784 in Shewanella sp. ANA-3

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 771 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 227 to 246 (20 residues), see Phobius details amino acids 253 to 277 (25 residues), see Phobius details amino acids 283 to 304 (22 residues), see Phobius details amino acids 325 to 348 (24 residues), see Phobius details amino acids 355 to 378 (24 residues), see Phobius details amino acids 409 to 428 (20 residues), see Phobius details amino acids 615 to 633 (19 residues), see Phobius details amino acids 638 to 657 (20 residues), see Phobius details amino acids 663 to 687 (25 residues), see Phobius details amino acids 709 to 732 (24 residues), see Phobius details amino acids 742 to 767 (26 residues), see Phobius details PF03176: MMPL" amino acids 143 to 407 (265 residues), 33.3 bits, see alignment E=2.7e-12 amino acids 553 to 766 (214 residues), 53.5 bits, see alignment E=1.9e-18 PF02460: Patched" amino acids 167 to 312 (146 residues), 35 bits, see alignment E=5.5e-13

Best Hits

KEGG orthology group: K07003, (no description) (inferred from 100% identity to shn:Shewana3_1784)

Predicted SEED Role

"FIG005548: transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KW48 at UniProt or InterPro

Protein Sequence (771 amino acids)

>Shewana3_1784 hypothetical protein (RefSeq) (Shewanella sp. ANA-3)
MLEKLVNGFESFLFRNRAWVVSIFILLTVFLGYQASQLKMDAAFIKNIPLNHSYMHTYLK
HQKDFGGANSIMVAVEDTSGNIFNPNFFDTLKNVHDQLFFIPGVDRSQVKSLFSPSTRFT
EVVEDGFAGGPVIPADFTTTEAGLNTVRDNIEKAGIVGRLIANDYSAAMVSAQLMDFDPQ
TGKPLDTIAFAAQLEQELRGKYETDKVKIHIIGFAKMAGDVADGAKGVLLFFVIAILITA
VMVYLFSKSLILTLLPLVCSLTAVIWQLGLLTVIGFGLDPMSILVPFLVFAIGVSHGVQM
INAVRRRVMDGQTTKAASASAFRSLLVPGGVALLSDTVGFITLLSIDIGIIRELAISASL
GVGVIIFTNLILLPLVISFTELKVAPQGAPTSDEVRAEAIWRYLAKFATPKYAVVVIVAT
IALYFTGLQQANQMKIGDLQGGAPALHQDSRYNLDTFFITDHFSITTDVMTVIVEASPEA
CTYHDMLTQIDEFEWLVRNTPGVESTVSLASVAKKVNAGFNEGNPRWEVLPRTTASLVQA
IGQIPTTSGLLNGDCSVMPVYLFMQDHKAETIETVVAKVKAVAAKMDNDKLQFKLASGPV
GVMAATNEAVAEAQLPMMIYVYGAVFVLCLISFKSLKATVAVIIPLYVVSTLAQALMTQL
NIGLAVSTLPVIALGVGIGVDYGIYILSTMSSKLSNGMPVQQAYYEALVERGSAVIFTGL
TLAIGVSTWFFSALKFQMDMGILLTFMFVVNMLGAIIILPALAAVFWRQAK