Protein Info for Shewana3_1761 in Shewanella sp. ANA-3

Annotation: ATP-binding Mrp/Nbp35 family protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 371 PF01883: FeS_assembly_P" amino acids 18 to 85 (68 residues), 27.7 bits, see alignment E=7.4e-10 PF10609: ParA" amino acids 106 to 350 (245 residues), 335.6 bits, see alignment E=5.1e-104 PF13614: AAA_31" amino acids 109 to 147 (39 residues), 37.3 bits, see alignment 8.4e-13 PF09140: MipZ" amino acids 110 to 175 (66 residues), 32.3 bits, see alignment E=2e-11 PF01656: CbiA" amino acids 111 to 278 (168 residues), 45.8 bits, see alignment E=1.8e-15

Best Hits

KEGG orthology group: K03593, ATP-binding protein involved in chromosome partitioning (inferred from 100% identity to she:Shewmr4_1656)

Predicted SEED Role

"Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KW25 at UniProt or InterPro

Protein Sequence (371 amino acids)

>Shewana3_1761 ATP-binding Mrp/Nbp35 family protein (RefSeq) (Shewanella sp. ANA-3)
MSSTQTDYRLSDDLLGPVLAILDAYIDPYLAKGLVSAGCVNKLAIEGKRLQLGLVYPYPC
MTQYRDTVMAITNKLAVLDAIDEVECEIDFQPKVYSAIASIAPIANVKQVIAVASGKGGV
GKSTTAVNLALALAAEGAQVGILDADIYGPSVPLMLGIPNFRPVSLDGKHMSAASAHGIA
AQSIGFMLSGDEAAVWRGPMAAGALAQLLNETQWPELDYLVVDMPPGTGDIQLTLSQKVP
VSGAVIVTTPQDIALADAKKGITMFQKVNIPVLGIVENMSFHLCPECGHKEHPFGTHGGS
KMAERYQVPLLGALPLHINIREAMDVGAPTVVAEPDSEVAALYREIARKVGAELALKQSQ
KTVSISVSDDE