Protein Info for Shewana3_1703 in Shewanella sp. ANA-3

Annotation: acriflavin resistance protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1087 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 333 to 352 (20 residues), see Phobius details amino acids 359 to 379 (21 residues), see Phobius details amino acids 385 to 409 (25 residues), see Phobius details amino acids 430 to 451 (22 residues), see Phobius details amino acids 463 to 484 (22 residues), see Phobius details amino acids 516 to 542 (27 residues), see Phobius details amino acids 545 to 565 (21 residues), see Phobius details amino acids 584 to 604 (21 residues), see Phobius details amino acids 907 to 924 (18 residues), see Phobius details amino acids 935 to 954 (20 residues), see Phobius details amino acids 960 to 982 (23 residues), see Phobius details amino acids 1009 to 1028 (20 residues), see Phobius details amino acids 1038 to 1063 (26 residues), see Phobius details PF00873: ACR_tran" amino acids 3 to 486 (484 residues), 439.5 bits, see alignment E=3.5e-135 amino acids 522 to 1065 (544 residues), 386.2 bits, see alignment E=4.5e-119 PF03176: MMPL" amino acids 336 to 494 (159 residues), 24.3 bits, see alignment E=2.2e-09 amino acids 873 to 1068 (196 residues), 31.1 bits, see alignment E=1.8e-11 PF02355: SecD_SecF_C" amino acids 907 to 1055 (149 residues), 24.8 bits, see alignment E=2.1e-09

Best Hits

KEGG orthology group: K03296, hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family (inferred from 100% identity to shn:Shewana3_1703)

Predicted SEED Role

"RND multidrug efflux transporter; Acriflavin resistance protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KVW7 at UniProt or InterPro

Protein Sequence (1087 amino acids)

>Shewana3_1703 acriflavin resistance protein (RefSeq) (Shewanella sp. ANA-3)
MSIISTSVKRPVTVWMFMLAIMLFGMVGFSRLAVKLLPDLSYPTLTIRTMYDGAAPVEVE
QLVSKPIEEAVGVVKGLRKISSISRSGMSDVVLEFEWGTTMDMASLDVREKLDTIALPLD
VKKPLLLRFNPNLDPIMRLALSVPNASEAELKQMRTYAEEELKRRLEALSGVAAVRLSGG
LEQEVHIQLNQEKLSQLNLNADDIKRRINEENINLSAGKVIQGDREYLVRTLNQFNSLEE
LGQVIVYRDAQTLVRLFEVATITDAFKERSDITRIGSQESIELAIYKEGDANTVAVAKKL
RDELVKINQDPKQNKLEVIYDQSEFIESAVSEVTSSALMGSILSMLVIYLFLRNIIPTLI
ISISIPFSVIATFNMMYFADISLNIMSLGGIALAIGLLVDNAIVVLENIDRCRSEGMSKL
DAAVTGTKEVAGAIFASTLTTLAVFVPLVFVDGIAGALFSDQALTVTFALLASLLVALTS
IPMLASREGFTALPELIKKTPKEKPTTKLGKLKHYSATVFSFPIVLLFSYLPSALLTLAL
VIGRFFSWLLGLVMRPLSSGFNFVYHAIESVYHKLLAMALRKQVATLLLTIGITGACISL
LPRLGMELIPPMNQGEFYVEILLPPGTAVGETDKVLQQLAMSIKDRPEVKHAYSQAGSGG
LMTSDTARGGENWGRLQVVLNDHTAYHQVTQVLRDTARRIPELEAKIEQPELFSFKTPLE
IELTGYDLHLLKRSADNLVKALSASERFADVNTSLRDGQPELSIRFDHARLAALGMDAPT
VANRIAQRVGGTVASQYTVRDRKIDILVRSELNERDQISDIDALIINPNSPQPIALSAVA
EVSLQLGPSAINRISQQRVALVSANLAYGDLSDAVAEAQQILSAQVLPASVQARFGGQNE
EMEHSFQSLKIALILAVFLVYLVMASQFESLLHPLLILFAVPMALAGSVLGLYITQTHLS
VVVFIGLIMLAGIVVNNAIVLVDRINQLRTEGVDKLEAIKVAAKSRLRPIMMTTLTTTLG
LLPMALGLGDGSEVRAPMAITVIFGLSLSTLLTLIVIPVLYALFDRKEFTHTATEQDNTA
ETTEARL