Protein Info for Shewana3_1674 in Shewanella sp. ANA-3

Annotation: peptidoglycan binding domain-containing protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 560 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF20142: Scaffold" amino acids 54 to 195 (142 residues), 98.1 bits, see alignment E=1.1e-31 PF01471: PG_binding_1" amino acids 222 to 287 (66 residues), 40.1 bits, see alignment E=5.2e-14 PF03734: YkuD" amino acids 315 to 479 (165 residues), 82.9 bits, see alignment E=5.7e-27

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_1674)

Predicted SEED Role

"Peptidoglycan-binding domain 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KVT8 at UniProt or InterPro

Protein Sequence (560 amino acids)

>Shewana3_1674 peptidoglycan binding domain-containing protein (RefSeq) (Shewanella sp. ANA-3)
MMRFKQFKPTLLLLLSLVSASGIASTQQLETLLEPLSIGERAKVDNTQVISAKLLSRVYQ
VRQYQPLWQDRDYAGTMLDVIKSADDEGLSKEDYHYSKLVELYQQLSASNWQDEYRSSVF
EVLLSDGIITYAIHLLNGKVNPSMLGKTWNYDETHLDFDTTLKQLEEHIKAHTVADAIAG
LAPKIEPYHQLKQYLAQYKDLAARYPFSPIPYTEVIKPGSTSPSVQGIATRLTELGYLAA
SAPADNSAAVNQPLTYDSTLEAAVRQFQTDHSLKADGVIGAGTMAALNVPYSQLVDQIRI
NLERARWLSANLPTNYLIVNLAGYELLLFKDNSLSWRTDIIIGKINAKTPLFKSKLKYVV
VNPTWTVPRSISTEIINHLRKEPDYLQKKHFKVVEGSGTPVDASGIDWHSMTRKNFPYWF
VQDPGEDNSLGLVKFIFPNQYSIYLHDTPAKSLFEQTDRAFSHGCIRVKDPLVLADKLLS
ANANWSSSTLSSKLSEGKTENLFLDEPLDILIMYWTVTLKDGKIKFYNDVYKRDPVLIEA
LNRPTYEGVLADDGLLNTME