Protein Info for Shewana3_1659 in Shewanella sp. ANA-3

Annotation: acriflavin resistance protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1031 transmembrane" amino acids 12 to 29 (18 residues), see Phobius details amino acids 334 to 353 (20 residues), see Phobius details amino acids 360 to 380 (21 residues), see Phobius details amino acids 386 to 408 (23 residues), see Phobius details amino acids 431 to 451 (21 residues), see Phobius details amino acids 463 to 482 (20 residues), see Phobius details amino acids 524 to 543 (20 residues), see Phobius details amino acids 854 to 873 (20 residues), see Phobius details amino acids 881 to 901 (21 residues), see Phobius details amino acids 907 to 929 (23 residues), see Phobius details amino acids 955 to 976 (22 residues), see Phobius details amino acids 982 to 1007 (26 residues), see Phobius details PF00873: ACR_tran" amino acids 5 to 1010 (1006 residues), 1018.8 bits, see alignment E=0 PF03176: MMPL" amino acids 292 to 486 (195 residues), 31.5 bits, see alignment E=9.2e-12 amino acids 851 to 1013 (163 residues), 22.2 bits, see alignment E=6.2e-09

Best Hits

KEGG orthology group: K03296, hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family (inferred from 100% identity to shn:Shewana3_1659)

Predicted SEED Role

"RND multidrug efflux transporter; Acriflavin resistance protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KVS3 at UniProt or InterPro

Protein Sequence (1031 amino acids)

>Shewana3_1659 acriflavin resistance protein (RefSeq) (Shewanella sp. ANA-3)
MILTDLSVKRPVFASVISLLLVAFGLVAFDKLPLREYPNIDPPIVSIETNYRGASAAVVE
SRITQLIEDRISGVEGIRHVSSSSSDGRSQVTLEFDISRNIEDAANDVRDRISGLLDNLP
EEADPPEVQKANGGDEVIMWLNLVSDQMTTLELTDYTRRYLSDRLSVVDGVSMIRIGGGK
VYAMRVWLDRQALASRSLTVADVEAALRAENVELPAGSLESKERHFTVRLERSYRTAEDF
ANLVISQGEDGYLVKLGDVAKVEIGSEEERIMFRGNKEAMIGLGVSKQSTANTLEVARAV
NALVDKINPTLPAGMSIKRSYDSSVFIEASIKEVYQTLFTAMVLVIIVIYLFLGSVRAML
IPAITVPVSLLGTFIVLYALGYTINLLTLLAMILAIGMVVDDAIVMLENIHRRIEEGDSP
LKAAFLGAREVAFAVIATTLVLVAVFMPITFLEGDLGKLFKEFAVAMSAAVIFSSIVALT
LSPMMCSKLLKPASQDSWLVRKVDSIMTGISRGYQNSLEKAMARPVLMSILVLIALGSSV
LLAQKVPQEFAPQEDRGSLFLMVNGPQGASYEYIESYMNEVENRLMPLVDSGDIKRLLIR
APRGFGRAADFSNGMAIIVLEDWGQRRPMKEVIGDINKRLADLAGVQAFPVMRQAFGRGV
GKPVQFVIGGPSYEELARWRDIMMEKAAENPKLLGLDHDYKETKPQLRVVIDRDRAASLG
VSISNIGRTLESMLGSRLVTTFMRDGEEYDVIVEGERSNQNTAADLQNIYVRSERTKELI
PLSNLVTVEEFADASSLNRYNRMRAITIEASLADGYSLGEALDYLNQVARAYLPAEAVIS
YKGQSLDYQESGSSMYFVFLLALGIVFLVLAAQFESYIHPMVIMLTVPLATVGALIGLWF
TGQSLNIYSQIGIIMLVGLAAKNGILIVEFANQLRDKGVDFDRAIIQASCQRLRPILMTG
ITTAAGAVPLVLAAGAGAETRFVIGVVVLSGIMLATLFTIFVIPTAYGLFARNSGSPEAI
AQQLDKELAQD