Protein Info for Shewana3_1621 in Shewanella sp. ANA-3

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 276 transmembrane" amino acids 28 to 48 (21 residues), see Phobius details amino acids 85 to 104 (20 residues), see Phobius details amino acids 130 to 156 (27 residues), see Phobius details amino acids 168 to 194 (27 residues), see Phobius details amino acids 201 to 220 (20 residues), see Phobius details amino acids 250 to 271 (22 residues), see Phobius details PF12679: ABC2_membrane_2" amino acids 15 to 220 (206 residues), 48.3 bits, see alignment E=4.3e-17

Best Hits

KEGG orthology group: None (inferred from 99% identity to she:Shewmr4_1553)

Predicted SEED Role

"Nitrous oxide reductase maturation transmembrane protein NosY" in subsystem Denitrification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KVN5 at UniProt or InterPro

Protein Sequence (276 amino acids)

>Shewana3_1621 hypothetical protein (RefSeq) (Shewanella sp. ANA-3)
MTPNAPSTFNNMLLIAGFECRKFLFNLRGIIALIAFALVWGILLLYPIQGASTLLMQPNI
KDLIDGLLGNQALNVLFDWPVAEMAIFWCFALYLFPMFSILIAADQFSSDKTRGTLRFYT
LRTSKDSLLFGRFLGQILIQGLLILLTILATIALALTRDIGLLLPALTSGALVGVNLVIV
ILPFTAVMTLLSLYANTARQAMVLATILWTVVSIALLILGNQSSLFEGLQWILPGAQLSN
MVNTNGLNSFAYAPIPLLQTAFALFLGRVYIQRSQL