Protein Info for Shewana3_1620 in Shewanella sp. ANA-3

Annotation: ABC transporter related (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 302 PF00005: ABC_tran" amino acids 19 to 161 (143 residues), 115.7 bits, see alignment E=2.6e-37 PF13304: AAA_21" amino acids 130 to 191 (62 residues), 34.2 bits, see alignment E=2.8e-12

Best Hits

KEGG orthology group: K01990, ABC-2 type transport system ATP-binding protein (inferred from 100% identity to shn:Shewana3_1620)

Predicted SEED Role

"ABC transporter, ATP-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KVN4 at UniProt or InterPro

Protein Sequence (302 amino acids)

>Shewana3_1620 ABC transporter related (RefSeq) (Shewanella sp. ANA-3)
MILIQCQGLSKHYGSKKALNNVNLTLEAGAPIALVGPNGAGKTTLFSLLCGYLTPSAGTV
RILGEAPNSPALLGQIAALPQDATLDPNLTIISQLSFFARIQGMDSKQANQEALRVLNLV
DLAEVAQQKPPSLSHGMSKRVAIAQALIGSPKLVLLDEPTAGLDPANAKKIRELVRTLSP
SITFVISSHNLDELEKLCDQVLYLDKGELGQSISMRSSNSGSDYLTLTMEHCDSEMLIQA
VGQIPGVVNITSKQAHVFVIQLNDTANRHYEFETALLALFKLQHWQYKMLLKGRTLEDTL
FS