Protein Info for Shewana3_1568 in Shewanella sp. ANA-3

Annotation: cell division protein ZipA (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 346 transmembrane" amino acids 6 to 26 (21 residues), see Phobius details TIGR02205: cell division protein ZipA" amino acids 3 to 342 (340 residues), 202.4 bits, see alignment E=7.8e-64 PF04354: ZipA_C" amino acids 215 to 340 (126 residues), 165.2 bits, see alignment E=3.2e-53

Best Hits

Swiss-Prot: 100% identical to ZIPA_SHESA: Cell division protein ZipA (zipA) from Shewanella sp. (strain ANA-3)

KEGG orthology group: K03528, cell division protein ZipA (inferred from 100% identity to shn:Shewana3_1568)

Predicted SEED Role

"Cell division protein ZipA" in subsystem Bacterial Cytoskeleton

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KVI3 at UniProt or InterPro

Protein Sequence (346 amino acids)

>Shewana3_1568 cell division protein ZipA (RefSeq) (Shewanella sp. ANA-3)
MEDLQLVLFVLGAIAIVAVLVHGFWSIRRQQPKSLKDSPMGNFYKKQAERGEGAPKRVDA
DGFDADGIGAVRVRKANEAHTPEAPAFNPYLKQEAKAQPQPVEPVQVEPKPLFKQEPSMA
QPDFSLQSPTAKEQHRGPKASRQEPVLPGHSANLAQAHVGQSHAAMVAQKAAEEQRAQVQ
MPTQTALFDEEEAYEEEQPQVVEQPDDDLGEPRDVLVLHVVAKEGQQLNGAELLPCFLTL
NFKYGDMNIFHRHVDNAGNGKVLFSIANMVKPGFFDPDNMEQFSTQGVVFFMTLPCYGDA
LMNFSIMLNSARQLADDIDAVVLDGQRQPWGEFTKQDYLHRIRANA