Protein Info for Shewana3_1533 in Shewanella sp. ANA-3

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 911 TIGR03805: parallel beta-helix repeat-containing protein" amino acids 96 to 431 (336 residues), 433.1 bits, see alignment E=8.1e-134 PF05048: NosD" amino acids 143 to 310 (168 residues), 38.4 bits, see alignment E=1.5e-13 PF13229: Beta_helix" amino acids 155 to 284 (130 residues), 40.8 bits, see alignment E=2.7e-14 amino acids 208 to 357 (150 residues), 45.1 bits, see alignment E=1.3e-15 TIGR03804: parallel beta-helix repeat" amino acids 236 to 278 (43 residues), 19.7 bits, see alignment 7.7e-08 TIGR03806: conserved hypothetical protein, HNE_0200 family" amino acids 570 to 904 (335 residues), 446.9 bits, see alignment E=5.7e-138

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_1533)

Predicted SEED Role

"FIG01057881: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KVE8 at UniProt or InterPro

Protein Sequence (911 amino acids)

>Shewana3_1533 hypothetical protein (RefSeq) (Shewanella sp. ANA-3)
MFNKTTHPLAKKGVKATPRHLWPSNSHRNKAQSKANWLMPTGVALLMAFNLTGCFSDDDP
APEVVTPPVVQPPETGPTFPEGAIKILRGDNLTTRIQEALINAQSGAVIVLPKGTFNIDS
TLLFDGDVDGDGSYAKNITIMGYGMKDTILNFAQANSGDGIFVQNALNITIQDMSVNEAK
NNGIKLKNTNGIILRRVGAVWEGELDKDNGAYGLYPVECENILIEDSYVRGSADAGIYVG
QSQYIVVRRNIAKENVAGIEVENSKYADVYDNEAMGNTGGILVFDLPINNHRYGSSVRIF
NNKVYDNNTPNFANASANPAGVHIVPPGTGVIVLSTADVEIFNNEITHHDTLGVTVSSFF
IAEPDMTSFVGNYGQPGQAIEDGWRPVPRNIYLHDNVITDYGSKPKGYLIQDIIRAYVIS
HGTLPGVLYDGLGEMLANNGTAAYLGLKEAPFATDGSDNVCASDNGDVSYGRLYANSNTD
ISIADVQYEKTQNNLLKCTQVSLPVHTVTFAGQVFGCGVDDNTAGCDGGVLVGGGGTIGE
GEGGLVGDGDQSLCQATGSNVSWDALLKANCPKLSDYNLFSDAKNPTTGPNSGGVPYDLN
TQLFTDYASKYRFVYLPSGQKASYSENEAFDFPVGSVIVKTFALPSNTSKRGISNESLIE
TRLLIHRPTGWSALPYVWNADKTDATLAKAGAISSQTLSHKGESLTFNYMVPSMNQCKQC
HQFKADDNSNAVFVPIGPKARHLNRNYSYQDGTMNQLLKWESLGILQGLPNLSQVPQVPA
YHDGDEATVASLSDTALMQTAKGYLDINCAHCHRPEGNASNTGLKLEYWRGYSDDAGFSH
GTCKSPVAYGGGNLGFDVVPGNAAESIMHFRMQSTTPGDRMPEIGRSLSHDEGVALISEW
IKRLPAASCSH