Protein Info for Shewana3_1478 in Shewanella sp. ANA-3

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1115 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details transmembrane" amino acids 300 to 321 (22 residues), see Phobius details amino acids 334 to 355 (22 residues), see Phobius details TIGR03505: FimV N-terminal domain" amino acids 62 to 134 (73 residues), 89.6 bits, see alignment 9.1e-30 TIGR03504: FimV C-terminal domain" amino acids 1071 to 1113 (43 residues), 58.3 bits, see alignment (E = 6e-20)

Best Hits

KEGG orthology group: K07288, uncharacterized membrane protein (inferred from 100% identity to shn:Shewana3_1478)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KV93 at UniProt or InterPro

Protein Sequence (1115 amino acids)

>Shewana3_1478 hypothetical protein (RefSeq) (Shewanella sp. ANA-3)
MKFRTSYLVGLMATVLAVSSTTSFIDPAIAADTPKIKPLKIMGPDGQIRQVNHQYGPTTS
KDTFWSIAQKVRPDASVSVYQVMAAVFDANPHAFNSDSYNSLERGMILLIPSKEVMLAIP
NSLAIARAERSDKQARSGAKATPRVETKPATKPAAPTQTVAQPKPKVDTPPKAEVKPEAA
TVTKAEVAATPTAPKMVSSDINARLEAAESKNLSLTDELARAQDQLAVRNTDVETLKAKV
EELNQQIAVLEETLQASKKQNLALKAEVEAAQTPETATTDEPAMPAEPDDLWRNLMSNPL
LLVAAAVIPALLLLVLVFWLLRRKRNKERRELEVQQAAMMAAGAAGVASASVLAMDDDDL
SDMAVHLDTDHADSIDSLLDVGSVDLQPEQEMTDSHEQMDMASEMFIDPGVSTEPQFEEE
EGQSLDDLWAEAMGDQEEAEAFAEEKAASGNILEEEDLDALLAGLGSDEEDTPQEAQATA
AGLDELDELAGFDLPAEPEPAAEDEDLAAAIAAELDSELENDAAPADDDIDALLAGFNQP
EVNEPATAADEDLDALLTDDAQAPAEAADDLGDEIAAELDDDLAELGVAQTDDIDALLAD
FDKPAAPEPDLSDEIAAELDDDLTDIGVSESDDIDALLASFDAPAQPDPEVAAAIAAELD
DELAPDLPTSDEDLDQLLAGFNTQEALVEEAAADVTGADDAEAEDMAQVEAALERDDIAT
ELEAALPEDLSMADDDLDSLLAEFDVPEQAEADADDFNFDLETTHVEPEEKDEEEDLLKG
IGAAHAIDGTDDTFELSEEIADNQDSADNAAAEPKFTGFDEDTDDIAPALAGAAVAASVA
AAASAKEKESSFFNDLKANKTKDPHVLDWDTELNFAPTPKAETLVKPETDLPLDPVPVQG
TKRQPLEFAPDAKPEVDAKNTAASTEFNLDDELDLGREFDLKDDTDDVDLSDDSVLAAFS
TNTEPEEEEVLTPEDSFALDDEHTLTVDEALAALDAQESRKSKKFVPEHDLTNFQNEHGY
IDIEKLLNDAEQDNTETDLYPEMDVEMSDVGALIGDAAMIDVDDEENSVNAKLDLARAYI
EIDDSDSAKALLREVQIDGNERQQEEAARLLKEMG