Protein Info for Shewana3_1446 in Shewanella sp. ANA-3

Annotation: acriflavin resistance protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1076 transmembrane" amino acids 23 to 44 (22 residues), see Phobius details amino acids 359 to 377 (19 residues), see Phobius details amino acids 384 to 405 (22 residues), see Phobius details amino acids 411 to 433 (23 residues), see Phobius details amino acids 456 to 478 (23 residues), see Phobius details amino acids 488 to 510 (23 residues), see Phobius details amino acids 562 to 585 (24 residues), see Phobius details amino acids 920 to 937 (18 residues), see Phobius details amino acids 943 to 964 (22 residues), see Phobius details amino acids 966 to 966 (1 residues), see Phobius details amino acids 972 to 995 (24 residues), see Phobius details amino acids 1017 to 1036 (20 residues), see Phobius details amino acids 1044 to 1070 (27 residues), see Phobius details PF00873: ACR_tran" amino acids 22 to 1069 (1048 residues), 469.4 bits, see alignment E=2.3e-144

Best Hits

KEGG orthology group: None (inferred from 54% identity to dar:Daro_3343)

Predicted SEED Role

"Acriflavin resistance protein" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KV61 at UniProt or InterPro

Protein Sequence (1076 amino acids)

>Shewana3_1446 acriflavin resistance protein (RefSeq) (Shewanella sp. ANA-3)
MKHATESSTSLGISGRIAAAFQNSAITPLLALLGLLLGLFAILVTPKEEEPQIDVTFADV
FIPFPGATPTEVENLVTLPAEQVISELKGIDTLYSFSQPDGAMIIVIFKVGVTRNDAIVS
LYNQIYSNMDKLPQGAGVGEPLIKPRGIDDVPIVSLTLWSKDKQVSAEQLTHLALGLETE
IKRIPGTREIYTVGQHEMVANVRIDPAKMNSFNLTYDKLRQSLNDNNHISMPASLVQGNQ
EIKVQAGQFLQSIDDVKQLVVSISQDKQGKPIPVYLADTADISLKSDIPTQSVWHSDKTD
IYPAVTIAIGKQPGQNAVDIADATLARIAKVKNVLIPSNVEVTVSRNYGETAADKSNTLI
LKLIFATSAVVVLVFLTMGARESLVVGVAIIITLAITLFASWAWGFTLNRVSLFALIFSI
GILVDDAIVVVENIHRHMALGKKSFSELIPVAVDEVGGPTILATFTVIAALLPMAFVSGL
MGPYMSPIPINASMGMLISLVVAFMVTPWLSRKLLKHHSGSATNTAHSSDADAQMNESKM
VRLFTRLIGPFLLGKGARKARIGLAAGVFVLIGIAVALPVGQLVVLKMLPFDNKSEFQVM
VDMPEGTPVEQTQRVLQDLSRYLATVPEVEHLQLYAGTNAPMNFNGLVRHYFLRHSQELG
DIQVNLVDKKHRKRDSHSIALSVREELQHIGAKYQANVKVVEVPPGPPVWSPIVAEVYGP
SPAIREQAAYELQSLFRETKDVVDIDIFLPAAQQKWQVMIDRSKASLMAVPYSNIVDLIA
TSVGGKDVSYLHIAQQKQPVPIRLQLQEGAKIDLEQVLNMKLQSQTGQSVPVSELVTIKR
GKIDAPIIHKNMIPMVMVVADMAGPLDSPLYGMFDMAGKIDGEGGLGFDQHYIHQPTGLD
SVAVLWDGEWKITYETFRDMGIAYAVGMIAIYLLVVAQFRSYLVPLIIMAPIPLTVIGVM
PGHALLGAQFTATSMIGMIALAGIIVRNSILLVDFINQETASGVPFERAVIHSGAVRAKP
IMLTALAAMIGALFILDDPIFNGLAISLIFGIFISTLLTLIVIPVLYYAAMKNRIT