Protein Info for Shewana3_1301 in Shewanella sp. ANA-3

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 823 PF01973: MptE-like" amino acids 176 to 340 (165 residues), 154.7 bits, see alignment E=2.1e-49

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_1301)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KUR6 at UniProt or InterPro

Protein Sequence (823 amino acids)

>Shewana3_1301 hypothetical protein (RefSeq) (Shewanella sp. ANA-3)
MQLQSNILNNFAISRFNEYYLPSVNRNTFEGIDSRTFYDRKFGTLFNQKDKLNIIIGMDS
GLLANYILELKEGIPDGSKFVFIELSTILPLLLIDIPSKLRSKLVIIDESGLDELFKQDD
IKLFIAKGEYWLIPSSSVSSRHIDDYNTLLNTVESRLQNEYFDNSVNFTQKIFVRTQLEN
IADNHTQAKELRNTHRQMTCIVIAGGPSLDDAIQWIKENQNSLYVIAVSRIAGKLARFGI
NVDIVVCVDPQDFSFDVSRGMFELNEESLLVHSYHVNPKVLSQWQGDCYYMGQRFPWNND
KDFDNIPTVGPTVTNSAVRLAIEMGFKQVLLSGVDFCYSKSGYSHASGTVEASLGPSLGH
DTLWVSTYDGYQAETLIQLKQAMESLENEAKTYPHVDIINLSSNAACIEGITHQPTKEIT
LPPLEKSKLLSDSQFNTIKENDLNKAYFECKKIRNELIKLQYLITEAKKLASKLNLDSKK
SSSTLEKIDKIELKINKKYKNLSQLIKFYGYFEFSKFLTTREIESWTQPQINQMTERYYE
AFLSSCVQVFKLVESACNKLQDRINELKTTPFNTLAEQWKRDNQPGRCFIWKRMHPDYSF
SADEKLLWTKLNNLYQLSLTQVRQVYVEALNTGSAMEHVYTKILRLNKSKSHQGLALLTH
NLMPLTEKDPEAKRLYHLALSFQLCLEQQPQQALDALLALPEELCTEMELKHIILLALKL
GKLELAEDTLVKILTHSDEYIPQYAHILKLRGKIQESVNVYLDYLEKYPSDTQTWIKLGL
FMVELGQAEGAHTAFSNALNVDPDNQVAQHYVAELTRIITEAQ