Protein Info for Shewana3_1295 in Shewanella sp. ANA-3

Annotation: acriflavin resistance protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1026 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 332 to 353 (22 residues), see Phobius details amino acids 360 to 381 (22 residues), see Phobius details amino acids 388 to 411 (24 residues), see Phobius details amino acids 431 to 452 (22 residues), see Phobius details amino acids 462 to 486 (25 residues), see Phobius details amino acids 523 to 541 (19 residues), see Phobius details amino acids 856 to 875 (20 residues), see Phobius details amino acids 882 to 902 (21 residues), see Phobius details amino acids 908 to 930 (23 residues), see Phobius details amino acids 958 to 978 (21 residues), see Phobius details amino acids 984 to 1008 (25 residues), see Phobius details PF00873: ACR_tran" amino acids 1 to 1008 (1008 residues), 465.8 bits, see alignment E=4.2e-143 PF03176: MMPL" amino acids 820 to 1010 (191 residues), 24.9 bits, see alignment E=1.4e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_1295)

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KUR0 at UniProt or InterPro

Protein Sequence (1026 amino acids)

>Shewana3_1295 acriflavin resistance protein (RefSeq) (Shewanella sp. ANA-3)
MIKAFVENGRLVSLVIALLLVAGFGAMSSLPRTEDPHITNRFASVITPYPGASAERVEAL
VTEVLENQLRRLEEIKLIQSTSRPGISVIQLELKDTVTDTDPVWSRARDLLADARNTLPD
GIQTPTLDDQVGYAYTAILSLVWNDSSQPRVDMLNRYAKELQSRLRLLSGTDFVKLYGAP
EEEILVQLDGYKMSQLQLTPGTIAKILSSADSKIAAGEINNNHFRALVEVSGELDSQSRI
RQVPLKVDAQGQIIRLGDIAHISRQPKTPADSIALVDGEQGVFVAARMLNNTRVDIWQGQ
VKQLVDEFNQELPANIKVQWLFEQNSYTSERLGGLIVNLLQGFVIILAVLLLTLGLRNAI
IVALSLPLTALFTLACMKYIGLPIHQMSVTGLVVALGIMVDNAIVIVDAIAQRRQQGMSR
LSAVSETLHHLWLPLAGSTITTILAFAPIVLMPGAAGEFVGGIAMSVMFALLGSYVISHT
LIAGLAGRFSLEGKHPVWYQHGINVPLVSGYFQASLRFALNRPLLSATFIGIIPLLGFYA
SGKMTEQFFPPSDRDMFQIELYLAPHVSLENTLNQVQLMDKQLHQIEGIIQVDWVVGGNT
PSFYYNLTQRQQGATNYAQAMVKASDFERANALIPELQQTLDKAFPEAQVLVRKLEQGPP
FNAPVELMIFGPNLETLRSLGDEVRNILAATPDVLHTRATLSAGAPKVWLQVNEDASLIS
GLTLTDIARQVQMATTGVIGGSVLEQTESLPIRVRLGDTSREQASRLSEIQLVTPSGTAV
PLSALSHNEVQVSRGAIPRRNGQRVNTIEAYIVSGVLPAQVLNDVKAKVAAISLPAGYRI
EIGGESAKRNEAVGNLLSNLILVVTLLLATVVLSFNSFRLTAIILLSALQSAGLGLLAVY
VFGYPFGFPVIIALLGLMGLAINAAIVILAELEDTDNARAGDKEVIITTVSSCGRHISST
TITTVGGFIPLIIAGGGFWPPFAIAIAGGTLLTTLLSLVWVPTMYLLLMKTRRTAPTPAL
SSQIAS