Protein Info for Shewana3_1231 in Shewanella sp. ANA-3

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 206 transmembrane" amino acids 21 to 41 (21 residues), see Phobius details PF09976: TPR_21" amino acids 15 to 205 (191 residues), 208.2 bits, see alignment E=2.1e-65 PF14559: TPR_19" amino acids 98 to 155 (58 residues), 33.3 bits, see alignment E=1e-11 PF13174: TPR_6" amino acids 127 to 154 (28 residues), 14.2 bits, see alignment 1.1e-05

Best Hits

Swiss-Prot: 32% identical to Y370_HAEIN: UPF0070 protein HI_0370 (HI_0370) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: None (inferred from 100% identity to shm:Shewmr7_1301)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KUJ7 at UniProt or InterPro

Protein Sequence (206 amino acids)

>Shewana3_1231 hypothetical protein (RefSeq) (Shewanella sp. ANA-3)
MEIYSTEEQQVDAIKQFWKDYGTSIVIGAVVGLGGLYGWNYYSDMKIVKAEEASQAFQTL
TTKSSDEAAMLAGVAEFSKNHDQKGYQALLDLIVAKTAVEAKDFAKAEEALKKVIAAKPG
AGLDTVATLRLARIQAEQGQIGTALATLDQVTDKAFLAQREELKGDFFVRQGEADKAKTA
YQAAMDNGGVVTSPALKIKLDNLNQA