Protein Info for Shewana3_1048 in Shewanella sp. ANA-3

Annotation: type IV pilus assembly PilZ (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 790 PF07238: PilZ" amino acids 143 to 226 (84 residues), 39.6 bits, see alignment E=2.8e-14 amino acids 473 to 589 (117 residues), 44.8 bits, see alignment E=7e-16

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_1048)

Predicted SEED Role

"FIG01057676: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KU14 at UniProt or InterPro

Protein Sequence (790 amino acids)

>Shewana3_1048 type IV pilus assembly PilZ (RefSeq) (Shewanella sp. ANA-3)
MSLDNHNALIEQLKPLLMEPNFQEIFQQLTADENNSTRFLLKMELNRLASPCTRIIDLRD
KSELPCTEVMLGQQRHFLDEPAKHSLQAAMSLYRNKYTLGVYEYVINAHQQRRQKLRQVT
QQPDGIEPEPFMVPGVVLGSYFNRAEERMNYSIRIAVSQPGRTEMPGITVDLSVGGARIR
LAANHPFDLDKPLKVKLLELSEEYYYPDLQLGVDYQIVDSQTNGEFIWLRLRRIGGTDAL
GEMLGNLIRGYKLRYKLDVNDVLVTASGLGFERHYLPHLPHLPLFLSQQSQSISHMLLSR
DNQQIVHYFQDENDISQLPAMLTPARLSALVNHPENPDYGLFFSFTYNAQGSLYFYSATL
AELKAKGMTSLFLGFASTKPSWRIFKLIPDKIYHAKGYRRATLPGDDAKYSPLVEQQLSQ
FSHMLQLIDLTNEDERASYKAWQDDSNANALKAFGQQRLTAHQIKPVSMQFSERRQEARF
AFKTLVNVSQGALKATGISLDISGRGMQLTLDNPTEFATNKPIMISLPKLQTIAGKTQLD
NLPYRLVRTRKNGVTLHLAAVMGHTPHVGVEFLNKLIAHNREKLEQLTENNSEIKELADG
LKNILLRELHSVPYFVEKTTKSAQVACLGVSTEHDEISDIFAAGSSDTLQYNLAPLLKDG
FFKRDILDPIRQMKPQQDMDFIEVFIQLTRQSRGQFHLKCVPATELGDAQAKIAFINQSK
LAGRFMALRIYRGATEKPDMGYLRRELEYINIHANHRAKQLEEQLWRIIGVGELLDITQE
VELRYPALQK