Protein Info for Shewana3_0961 in Shewanella sp. ANA-3

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 354 PF13588: HSDR_N_2" amino acids 48 to 128 (81 residues), 38.3 bits, see alignment E=1.2e-13 PF04313: HSDR_N" amino acids 50 to 127 (78 residues), 34.9 bits, see alignment E=1.5e-12

Best Hits

KEGG orthology group: K07504, hypothetical protein (inferred from 100% identity to shn:Shewana3_0961)

Predicted SEED Role

"Prophage Lp2 protein 6"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KTS7 at UniProt or InterPro

Protein Sequence (354 amino acids)

>Shewana3_0961 hypothetical protein (RefSeq) (Shewanella sp. ANA-3)
MDFIERINVLAKRIPQIQSNLQTEEATKNALIMPFLDKVLGWDVYDPTEVIPEFTADTIN
KKGEKVDYALMKDGEVQILIECKKYGEKLTIKHASQLFRYFSVTNARLAILTNGSEYQIF
TDSDAPNKMDEKPFLKFDLEDIDEHIIPEVRKLAKSVFNIDSIVSSAGELKYLSQIKKIV
AEQFKEPEEEFVRFFASRTYEGTLTPKVKQQFHDITQKALMQFLSDSINERIKTALNNDK
LTEVPQTDVPSTPEEEKNKVITTEEEVEGYNIIKAILRQKVDLSRVVARDTQSYFGILLD
DNNRKPLCRLHFNAKQKYLGLLDAEKNETRHPINNLDEIFNFSEQLMNTVNFYE