Protein Info for Shewana3_0836 in Shewanella sp. ANA-3

Annotation: lysine exporter protein LysE/YggA (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 207 transmembrane" amino acids 6 to 28 (23 residues), see Phobius details amino acids 44 to 68 (25 residues), see Phobius details amino acids 74 to 92 (19 residues), see Phobius details amino acids 113 to 135 (23 residues), see Phobius details amino acids 150 to 176 (27 residues), see Phobius details amino acids 188 to 205 (18 residues), see Phobius details PF01810: LysE" amino acids 15 to 206 (192 residues), 112.6 bits, see alignment E=8.6e-37

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_0836)

Predicted SEED Role

"Putative threonine efflux protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KTF5 at UniProt or InterPro

Protein Sequence (207 amino acids)

>Shewana3_0836 lysine exporter protein LysE/YggA (RefSeq) (Shewanella sp. ANA-3)
MELDSLLMFVIACLSINLIPGPDVVYIVSNTMKGKMASGLKAALGLGAGYFVHTLAACLG
LSAIILSSALAFNIVKWLGAAYLLYLGVKALISCWQGQSRIVIGDNATSNTNVFLQGMVV
SVLNPKVALFFLSFLPQFIDPTSGEVATQLLILGLLFSGLATLVNLLYAACGSWLFNRPD
SQRYARGLEGVSGVLLVGLAGKVAISD