Protein Info for Shewana3_0783 in Shewanella sp. ANA-3

Annotation: major facilitator transporter (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 463 transmembrane" amino acids 24 to 48 (25 residues), see Phobius details amino acids 59 to 76 (18 residues), see Phobius details amino acids 96 to 115 (20 residues), see Phobius details amino acids 124 to 145 (22 residues), see Phobius details amino acids 164 to 184 (21 residues), see Phobius details amino acids 195 to 216 (22 residues), see Phobius details amino acids 245 to 262 (18 residues), see Phobius details amino acids 272 to 297 (26 residues), see Phobius details amino acids 312 to 331 (20 residues), see Phobius details amino acids 338 to 359 (22 residues), see Phobius details amino acids 365 to 389 (25 residues), see Phobius details amino acids 401 to 422 (22 residues), see Phobius details amino acids 428 to 449 (22 residues), see Phobius details PF13000: Acatn" amino acids 25 to 219 (195 residues), 32.6 bits, see alignment E=3.5e-12 PF07690: MFS_1" amino acids 27 to 293 (267 residues), 43.4 bits, see alignment E=2.3e-15

Best Hits

KEGG orthology group: K08218, MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG (inferred from 100% identity to shn:Shewana3_0783)

Predicted SEED Role

"AmpG permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KTA2 at UniProt or InterPro

Protein Sequence (463 amino acids)

>Shewana3_0783 major facilitator transporter (RefSeq) (Shewanella sp. ANA-3)
MLMFVIGLNRRILEFFSVYYHKRVLILLLLGFSAGLPLMLVFSTLSFWLREAGVDRTSIG
YFSWIALAYAFKWAWSPLVDRLSLPILTRFLGRRRSWMLFAQLLLVGAILGMSFSDPLQD
LERLAVFALMVAFASATQDIVIDAFRIESAPEKMQAALAAAYQVGYRSAMIVATAGALSI
AAWVEPGNTEYNLLAWQTSYLVMAGLMFVGVLTTLFSREPQVDTRAADETELAVKQRLSE
RYPKLLAASLSWIYTASILPFIDFFKRYGRSAILILLLISCYRISDIVMGIMANVFYVDM
GFSKEEIAYLSKIYGLIMTLVGAAFGGILLARFGTMKILFLGALLVAVTNLLFAWQAMIG
YNVQFLTFAISVDNFSAGIATAAFIAYLSSLTSSGYSATQYALLSSIMLLFPKFIAGFSG
AYVDAYGYVNFFVAASVIGFPVLLLIHLVNKYVPHNSKGDAES