Protein Info for Shewana3_0735 in Shewanella sp. ANA-3

Annotation: UBA/THIF-type NAD/FAD binding protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 277 transmembrane" amino acids 21 to 42 (22 residues), see Phobius details amino acids 239 to 257 (19 residues), see Phobius details PF00899: ThiF" amino acids 15 to 271 (257 residues), 133.5 bits, see alignment E=3.7e-43

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_0735)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KT54 at UniProt or InterPro

Protein Sequence (277 amino acids)

>Shewana3_0735 UBA/THIF-type NAD/FAD binding protein (RefSeq) (Shewanella sp. ANA-3)
MTEAYQNRFSGIGRLYGQKALAKFAASHVVVIGIGGVGTWAAEALARSGIGQITLIDLDD
ICVTNTNRQIHALSSTIGESKVAVMAQRIRSINPDCQVNEVEDFITVDNLGEYLLGAKAG
GNIDYVVDCIDAVKQKAALIAWCKRQKIKIVTVGGAGGQTDPTQIQLTDLAKTYQDPLLA
KVRNILRREYNFSKNVQRRFAVDAVFSSEQLVYPQADGSVCSSKATADGSMRMDCASGFG
AVTMVTGTFGFVAASRVLARLAQIANEPVANEPAASE