Protein Info for Shewana3_0665 in Shewanella sp. ANA-3

Annotation: OmpA/MotB domain-containing protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 230 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 44 to 61 (18 residues), see Phobius details amino acids 72 to 90 (19 residues), see Phobius details PF13441: Gly-zipper_YMGG" amino acids 43 to 89 (47 residues), 36.3 bits, see alignment 7.3e-13 PF13488: Gly-zipper_Omp" amino acids 46 to 94 (49 residues), 38.5 bits, see alignment 1.7e-13 PF05433: Rick_17kDa_Anti" amino acids 47 to 87 (41 residues), 24.4 bits, see alignment 4.2e-09 PF00691: OmpA" amino acids 124 to 219 (96 residues), 70.9 bits, see alignment E=2e-23

Best Hits

Swiss-Prot: 56% identical to YIAD_ECOLI: Probable lipoprotein YiaD (yiaD) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 99% identity to shm:Shewmr7_3356)

Predicted SEED Role

"Outer membrane lipoprotein omp16 precursor" in subsystem Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KSY4 at UniProt or InterPro

Protein Sequence (230 amino acids)

>Shewana3_0665 OmpA/MotB domain-containing protein (RefSeq) (Shewanella sp. ANA-3)
MMKPSLIKSLPASKLAIVVVTGALIASGCSTVNPYTNEQQTAKATTGALIGAVAGAAVGV
ASSSKSDRGKGALIGAASGAAVGGGIGYYMDVQETKLRQQLASTGVSVTRDGDNIVLNMP
NEVTFGVDQTELSDGAKRVLNSVALVAKEYSKTQLNVLGYTDSSGSDSYNLRLSQVRASE
VGNYLMSKGVASARVKSKGMGEASPIASNANAAGRAQNRRVEIVLTPTGQ