Protein Info for Shewana3_0660 in Shewanella sp. ANA-3

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 256 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 70 to 89 (20 residues), see Phobius details amino acids 101 to 118 (18 residues), see Phobius details amino acids 156 to 174 (19 residues), see Phobius details amino acids 181 to 200 (20 residues), see Phobius details amino acids 212 to 231 (20 residues), see Phobius details PF01569: PAP2" amino acids 102 to 230 (129 residues), 44.3 bits, see alignment E=7.7e-16

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_0660)

Predicted SEED Role

"FIG01058957: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KSX9 at UniProt or InterPro

Protein Sequence (256 amino acids)

>Shewana3_0660 hypothetical protein (RefSeq) (Shewanella sp. ANA-3)
MKSNVRTTFFSFAKGHLLAPWLVFAVIIFWLELTHADMRFASLLFHWQGGVDSWPLRGHW
LTENLLHVTGRNLVILLAVVVVSCIGLSFRVDKLRPYRKGFIYLFCSVLASVVLVRLGKS
LTHMTCPWDVLEFGGRMLHSSLFARLPEGAEFGQCFPGGHSSGGFAWVASYYVLKEYRPQ
YAKTGLIFGIVLGALFGFAQELRGAHFLSHDLWSLAIAWTSASLLYYGFFLRVPKVNKIK
VANKISIISTKEAISK