Protein Info for Shewana3_0501 in Shewanella sp. ANA-3

Annotation: fatty acid cistrans isomerase (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 797 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF06934: CTI" amino acids 111 to 796 (686 residues), 890.6 bits, see alignment E=4.5e-272

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_0501)

Predicted SEED Role

"Fatty acid cis/trans isomerase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KSH2 at UniProt or InterPro

Protein Sequence (797 amino acids)

>Shewana3_0501 fatty acid cistrans isomerase (RefSeq) (Shewanella sp. ANA-3)
MNPINAVWKRWLLALVLAVTGCASVAQVDFDNLYGKSSPLTRADNQPIQSELTAQTKTYH
SAVEPIINGRCVVCHACYDAPCQLKMTSSEGIERGANKEKVYQGTRLMAATPNRLFVDAH
TPEAWRERGFYPVLNERAQTPQANTQASVLARMLTLKQAHPLPDTKLLDKSFDFSLDRVQ
QCASIEEMDKYEQYQPLAGMPYGLHALNQQEHKVLMQWLEQGAVLPTPPALSAEFNQEIA
RWEQFLNADSLKAQLSARYIYEHLFAFHLYFESLTAADAPAAYFELVRSRTPPGKPIDLI
ASRRPFDDPQVSRVYYRFQPYRATIVDKTHIPYTLNNTVLQNWQKWFIDAKYQVSSLPSY
KPSVAANPFEAFIQLPAGSRYRFMLTRAQDTIMGFIKGPVCRGQVALNVINDRFWVYFVT
PEYMDDSDFTDFYQGQIENLRMPAEEESTALAVTWVKYAAKQGEYMRARNQFLNHKFKNG
RHLTIDGLWDGNGNNDNASLTVFRHFDNATVVKGLVGESPKTAWVIDYALLERIHYLLVA
GFDVYGNYGHQLLTRLYMDFLRMEGESNFLTLLPQEERRKQFKDWYQDAGTQLTAFIAGD
INTFNQPTGVLYYTDDLKAELYQKLAAKVGEVQPQRYQIALSQLQPNSKALLQALGRVKG
TQATLLPELTMIMIEPQTPGKAEIFTLVRNSAHRNISSLFNEESNREPAKDDVTLVRGLL
GSYPEAFWHIKEQDLAKVVAKVEGMQTEKDYEALLDLAAVRRTDPRFWAFSDKLNQAFFD
SHPIESGWLDYNRLQNR