Protein Info for Shewana3_0481 in Shewanella sp. ANA-3

Annotation: response regulator receiver protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 523 PF00072: Response_reg" amino acids 9 to 120 (112 residues), 94 bits, see alignment E=6.8e-31 amino acids 158 to 267 (110 residues), 85.5 bits, see alignment E=2.8e-28 PF02518: HATPase_c" amino acids 410 to 515 (106 residues), 33.1 bits, see alignment E=6.5e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_0481)

Predicted SEED Role

"Sensor histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KSF3 at UniProt or InterPro

Protein Sequence (523 amino acids)

>Shewana3_0481 response regulator receiver protein (RefSeq) (Shewanella sp. ANA-3)
MQLTQMQCLIVEDMDALRKIMAEQLRQLGFGQVLQADCGRQALDMLQRMHIDLLLLDWSM
PDGHGQELLESLRQQDKWQDLPIIIVTANAHRSLVEVAMKYGVLDIIAKPFNSKTLQARV
LQALTRRHKRTQVTPSSAMAAKIDATATTETAPALNVVLVVDDMPDNLAFMAGLLNDDYK
VLFAKDGKAGLKICQSATPPDVVLLDVMMPEMDGHQVLQALRTEPRSAEIPVIFVSALGE
VEHHLQGLRGGAIDYLTKPVQPEILKLKLANVLAQVQRQRALQQECDELLRLAQLKDNAD
SIISHDLKNPLATISALAQKLAQDKNFPKEWLSKINLVDELALQSINTVNLTSEVLRIEA
GQYALDAEWFSVHEMLKQLLQAAQVNFHSKQLVAYLSPDEDPCSSFDVMGDPKLCHPMLF
NLIKNAFEAARPKTKVAISLSRHEGDVLIAIENTGAVPADIREQFWEKYVTQGKAEGLGI
GTYAARLFALAQKGEANLVVDDAKLLTRVEIRLPAAIDAVVAE