Protein Info for Shewana3_0443 in Shewanella sp. ANA-3

Annotation: permease (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 497 transmembrane" amino acids 15 to 35 (21 residues), see Phobius details amino acids 48 to 70 (23 residues), see Phobius details amino acids 103 to 127 (25 residues), see Phobius details amino acids 327 to 347 (21 residues), see Phobius details amino acids 357 to 377 (21 residues), see Phobius details amino acids 380 to 409 (30 residues), see Phobius details amino acids 421 to 444 (24 residues), see Phobius details amino acids 464 to 482 (19 residues), see Phobius details PF03773: ArsP_1" amino acids 6 to 441 (436 residues), 151.4 bits, see alignment E=1.6e-48

Best Hits

KEGG orthology group: K07089, (no description) (inferred from 100% identity to shn:Shewana3_0443)

Predicted SEED Role

"Transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KSB7 at UniProt or InterPro

Protein Sequence (497 amino acids)

>Shewana3_0443 permease (RefSeq) (Shewanella sp. ANA-3)
MLLKNFIDLFLDSAPWLLLGLILAGLLKVFVPMAWMQKQLGGHGFKTVVKAALLGAPLPL
CSCGVIPAAVGLRRSGASKAATTSFLVSTPETGVDSVTVSYVLLGPFMAIVRPIAAITSA
IVAGLLVGRDDDDGKPAAKAEAQLDKAQSGKALASAAPVASCCASKSSSAETVVKAEAVK
SCCASTKAPAITPVKSSCCSSDDAKAPATEPKIKMTPMAAPSLMATGGPTVGMVNVAKGD
GAKANPVKVESAGSCCGTQTAAPEKIVVVKKGACCGTSSKATDSHQAEGESCCASTQDMA
TELKSESVIARIGLGLKYAATDLVRDTTLWLLVGLFFAALVQTYVPADFLAKWGDGLLAM
LVMVLVSVPMYICATASTPIAAGLLLAGVSPGAVLVFMMAGPATNIATLGVVTKELGKRA
LYGYLGGVLGVALVAGALVNYLVANFGFEVMPQIGEQHQMLPEWLVAASGIVLALLMAKV
VFEKIPRSWLRRSDCCS