Protein Info for Shewana3_0439 in Shewanella sp. ANA-3

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1073 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF18650: IMPa_N_2" amino acids 157 to 363 (207 residues), 38.6 bits, see alignment E=1.1e-13 PF18642: IMPa_helical" amino acids 389 to 494 (106 residues), 106.9 bits, see alignment E=1.2e-34 PF17291: M60-like_N" amino acids 537 to 630 (94 residues), 38.1 bits, see alignment E=2e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_0439)

Predicted SEED Role

"FIG01057222: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KSB3 at UniProt or InterPro

Protein Sequence (1073 amino acids)

>Shewana3_0439 hypothetical protein (RefSeq) (Shewanella sp. ANA-3)
MEIRLISAAIALILAGCGGGSEDSGSTTPPPEPPVQPPAVTQYTASTSSVSGGKLIPSSQ
KVDAGKSASFSVQADNGFVLDSISGCGGALTEQTYITATISADCTITPSFISNAENAIRH
QDHTLASANELIDFSTTELAKVDAARKAKITELYQGVGNSISWHPTHDSITFSSFMPENT
FTLLPSNVDGSGASAVRGLVMASEQQGQRYAAMGGNLFAVNNSDQSDKLLKNLIGWLTKG
GDQQNGLSIITAQMPSRADSWYFPHNEGIRTWLSKYYPDAHSINDANSCDYTALASCIDT
LKPDLIVISDIDRDNLGYAGIQAAITKAKAAGIPLLLSNYRREQSAMLSPFYLEMGLSTA
GNYWSKLNANNLSIDTILAQDKALADVETLLANLREQRFDTQVLNDCGGNYLSCNSSAFV
EAFKAGADWYRSNAETLDNNDIDAFNSPNFSLMKAGLLLADKYRSEIDYPIAYSESAQWQ
QALFADWTVSYARAHNLAQADLGEYVTDRANLSKGSNAHYAYPATVTERKSITVPYSGQW
TTTGWYALPGQTITLSRLDNTNANVEIKLNYHRRNTNRAYEQKVYRAPLELAQQRLKLAK
GQSIEFSTPYGGPIYLYISGGEGALSVDVQAKNVAKHPSIMDFSNPAEITAFNDKIQNTE
LPHVDLRTDGAEQHLRRDRFMNAIGGKIPDVNALLKSIVEDHINSVYTLAGLKIQGKSLS
ESLPADVLTSCQALFGADCTDASLHTRSIIQHANYDQNAHCGSGCSGNPWDAAWNISPTG
WGDNHELGHNLQTNRLNVQYATAANSDNWTGYGSRAGENSNNIFPYVVLWKTHYLRDANT
NTITDGHMNHKDLFYVFMSDAAGTTDTSGKRVIFGANCKVLDAGEDRYTAPWASNAYAVH
NGYRMAFYIQMALKANGMTLSDGTSLSNGFNIFTLLYQHSRIFGKYANNASDWEANRSKL
GFELFPYEGHSVYGGKTVRDIPGNDFMLVSLSKLTGKDWRSHFDILGLRYSSLAAAQVIA
NASQGTVPMGMYELETDLPPANMSQGLNFIPLSLSDGSTLWKGTGSPSQCAKP