Protein Info for Shewana3_0069 in Shewanella sp. ANA-3
Updated annotation (from data): Fructokinase (EC 2.7.1.4)
Rationale: Specifically important for utilizing Sucrose. Automated validation from mutant phenotype: the predicted function (FRUCTOKINASE-RXN) was linked to the condition via a MetaCyc pathway. This annotation was also checked manually.
Original annotation: ribokinase-like domain-containing protein (RefSeq)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K00847, fructokinase [EC: 2.7.1.4] (inferred from 100% identity to shn:Shewana3_0069)Predicted SEED Role
"Fructokinase (EC 2.7.1.4)" in subsystem Fructose utilization or Mannitol Utilization or Ribitol, Xylitol, Arabitol, Mannitol and Sorbitol utilization or Sucrose utilization or Sucrose utilization Shewanella (EC 2.7.1.4)
MetaCyc Pathways
- heterolactic fermentation (15/18 steps found)
- sucrose degradation IV (sucrose phosphorylase) (4/4 steps found)
- sucrose degradation II (sucrose synthase) (4/5 steps found)
- superpathway of anaerobic sucrose degradation (14/19 steps found)
- sucrose degradation III (sucrose invertase) (3/4 steps found)
- D-sorbitol degradation I (2/3 steps found)
- mannitol cycle (3/5 steps found)
- sucrose degradation I (sucrose phosphotransferase) (1/3 steps found)
- sucrose degradation VII (sucrose 3-dehydrogenase) (1/4 steps found)
KEGG Metabolic Maps
Isozymes
No predicted isozymesUse Curated BLAST to search for 2.7.1.4
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0KR95 at UniProt or InterPro
Protein Sequence (319 amino acids)
>Shewana3_0069 Fructokinase (EC 2.7.1.4) (Shewanella sp. ANA-3) MTVLLSFGEVLVDLLPTDISGKSHQAIAGGAPANVAVGYAKLGGKSYFAGGISTDDYGAM LKQALANEGVVTDYLTQVPEAPTATVVVNLDEHGERTFEFNRQGTADLCYSPRHFDAIPW QQMDIFHLCSNTFTEASIFNASLYGACCANSFNKIVSFDVNLRLSLWPDTALLAERVEQC FRYTQVLKMSREEAEYLALTRNKSFEDYLQFCLAHGVEVILITDGANPVQCITVNERFSV PVPQIKAVDTTAAGDSFMAGFLFALGFELAFDLEHLTLKHRLACQAQLRKAIEFAVRCGA VTCGQKGAFPALPTLSQVS