Protein Info for Shewana3_0019 in Shewanella sp. ANA-3

Annotation: amidohydrolase (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1062 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF07676: PD40" amino acids 94 to 120 (27 residues), 30.9 bits, see alignment (E = 6.2e-11) amino acids 192 to 206 (15 residues), 18.3 bits, see alignment (E = 5.5e-07) amino acids 241 to 262 (22 residues), 12.3 bits, see alignment (E = 4.1e-05) amino acids 444 to 468 (25 residues), 11.5 bits, see alignment (E = 7.4e-05) PF01979: Amidohydro_1" amino acids 974 to 1038 (65 residues), 55.7 bits, see alignment 1.5e-18 PF07969: Amidohydro_3" amino acids 978 to 1037 (60 residues), 34.8 bits, see alignment 4.3e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_0019)

Predicted SEED Role

"FIG01058271: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KR45 at UniProt or InterPro

Protein Sequence (1062 amino acids)

>Shewana3_0019 amidohydrolase (RefSeq) (Shewanella sp. ANA-3)
MLKPKLTPLYIALMLGLSSHTVQATDAQKASWNVNAPANAPLEKVTIDVTEGTWMNISVS
PDGKHLVFDLLGDIYQIPVTGGEAKPLAQGIAWQMQPVYSPDGKHIAFTSDADGGDNIWI
MDADGSNPRTVTTETFRLLNSPAWSPDSEYLVGRKHFTASRSLGAGEVWLYHVAGGEGVK
LTERPNDEKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKIKRYDTQTGDIEI
LIEGTGGAIRPTPSPDGTKLAYIKRDDFQSSLYLLDLKSGETTKLYGDLERDMQETWAIH
GVYPTMAWTQDNKDIFFWAKGKINRLNVANKTVTNIPFSVKTQLDVQPSVRFKQDIDKDV
FDVKMLRMTQVSPDGSKVAFEALGKIWLKTLPDGKMTRLTELGNDIEELYPQWSRDGKNI
VFTTWNDQDQGTVQVISAKGGKAKQLTTETGKYVEPTFSPNGELVVYRKTQGGHLTPRTW
SQEPGLYKVDLKTKQNKKISAEGYQAQFGASADRIFFMNTGDNDTPQLASINLDGFDKRV
HYSSKHATEFRVSPDGEQLAFAERFKVWVTPFAKHGETVEIGPNASNLPVTQLSVRAGES
ISWNSKSNQLYWTLGPELYQANVDSQYLKKDEQAKPSIINLGFTETADVPRGTVAFVGGK
VITMENDQVIDKGVVIVKDNHILTVGDANTAIPKDAQVIEISGKSIMPGLFDAHAHGAQA
DDEIVPQQNWALYSGLSLGVTTIHDPSNDTTEIFAASEQQKAGHIVGPRIFSTGTILYGA
NAPGYTSHIDSLDDAKFHLERLKKVGAFSVKSYNQPRRNQRQQVIAAARELEMMVVPEGG
SLLQHNLTMVADGHTTVEHSLPVASIYNDIKQFWSQTKVGYTPTLVVAYGGISGENYWYD
KTDVWAHPRLSMYVPSDILQARSMRRPHAPDSHYNHFNVAKVANEFNKLGIHPNIGAHGQ
REGLAAHWEMWMFAQGGMSNMDVLKTATINPATTFGLEHQLGSIKTGKLADLIVINGDPL
ADIRVTDKVTYTMVNGKLFDAESMNQLNGNKQQRKPFFFEKI