Protein Info for Shewana3_4354 in Shewanella sp. ANA-3

Annotation: UBA/THIF-type NAD/FAD binding protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 575 PF00899: ThiF" amino acids 313 to 529 (217 residues), 79.2 bits, see alignment E=2.8e-26 PF13241: NAD_binding_7" amino acids 314 to 421 (108 residues), 22.5 bits, see alignment E=1.4e-08

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_4354)

Predicted SEED Role

"Molybdopterin biosynthesis protein MoeB" in subsystem Molybdenum cofactor biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0L3D6 at UniProt or InterPro

Protein Sequence (575 amino acids)

>Shewana3_4354 UBA/THIF-type NAD/FAD binding protein (RefSeq) (Shewanella sp. ANA-3)
MLSEIKQHLINQGFNCTTSEVAGGERIVVETTILNHGIQLMLVADPPYYRLPEFFLINPD
SIGRLAHVSVHEYAGIQIGTVCVNAPESLSVNFEQPLLVVEESLRRHILLLEKCITNPDW
NHSELLREFSSEWLRICAPDSFKPLLANIARPVLQTLSVYRPVGGKQFGIESHYMVHPAD
DSLSVISDIQLSIDKGNRRIAGKAVVIPIETLTPAPKHSDALDEWYLNTISSLPVKVRSD
LQQKYGQWRETAYWLVFTAKTVNDERTWFALKLSGKTKNALPLSDEKLKNWKLEALPIRL
FNQENTVERGGGILSLADKKVAVIGVGSVGCEIAHKLSAAGVRHLTLVDPDVYEINNLYR
HVLEQHWVGAPKTAALSVALQRQFPWSCAQWKLDKLMEFARSSRMNDFDLIVIAIGNPTQ
ERLFKQYLLDNNSKVAVMNSWLEGFGVGGHATLDIPSSEGCLLCSYVCQETGVRGLVSNM
NFIEPNQVTMKNIAGCGEQFISYGAASSAQTAVMAANLAIRYLEGKQAKSCKVSWKGLDE
DAMAEGIRLTHRYYNFSSSLEYLPLVDEDCDVCTH