Protein Info for Shewana3_4281 in Shewanella sp. ANA-3

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 805 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF13752: DUF4165" amino acids 27 to 133 (107 residues), 56.2 bits, see alignment E=7.1e-19 PF12245: Big_3_2" amino acids 184 to 258 (75 residues), 27 bits, see alignment E=8.7e-10 PF13750: Big_3_3" amino acids 550 to 702 (153 residues), 182.3 bits, see alignment E=1.1e-57

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_4281)

Predicted SEED Role

"orf; hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0L365 at UniProt or InterPro

Protein Sequence (805 amino acids)

>Shewana3_4281 hypothetical protein (RefSeq) (Shewanella sp. ANA-3)
MQINKSLLLGLCSVICSGMANAAVEGFSYTDTNATVKTTEGSLINPQTDAMVYLSGGLDN
KLKLSVINTSGVTVFNNTTDFIRVSDRLSFSGREFYGKSITIPKLMDGLYSLKIETINSS
GTTIDQYTKVVEVDTEGPIIGDWYGNGTSNYGAETGSNEIWWLNTQNTGEDSKIWITDVK
GAVSGSVIVQKLNSDSIVLTRPMVIDQAAFKAVINAQTDLSNILPSNNASDPYSMQAQLY
DAAGNITRSTVKTFYYDNYGGAPSSPFAVFDPDANLAESVSSSFVGFVAYTPGMTVKTNP
VRLLYRVPVDNVRDAGVKGGLALANSVGATNVIINGEYGYFDMTAPFGYNNANQIKWVDF
GRWMAGTIQYNLSLSETASKSPVLTSATFLLNDVRMSITTGIMHHNSILPATMTDFELRV
QPRDYVQRASFRGYSCDIPAGESICSLTGLTYEMTKGGYGYLHDAIGVVSVGLPMGTLYA
NYSYGESTYNDAQYPQMTSFKVDTTTNTLTAFVYLPGAGSWFERLVMKAARIKYGTKYLN
PISSIRNGVNWEYVFNLNSLPTGNHSLELEMVENHGPTTVSPLQTFKVENATPTISITNS
GSAVFNEIVGLDDLVVSIADESSYTIDSVIISGGSANDTVYLATVSKGNNVYSLQYPRLF
PSLTSGEIYTLTVKATDVFGNQGVSSKSFTYQPPNIVNVGSLTTLAVSRDLASSADKPVS
EVVINDLRTVESQLASGPQDALFTLRTDAEISVQVLGQVVKPGQTVTLNPVATSGVVKFS
VYPAASGQKGKAQFLFEILEVKSNI