Protein Info for Shewana3_4259 in Shewanella sp. ANA-3
Annotation: putative periplasmic protein (RefSeq)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
No protein families (PFam or TIGRFam), signal peptides, or transmembrane helices were found in this protein.
Best Hits
KEGG orthology group: K12066, conjugal transfer pilus assembly protein TraK (inferred from 100% identity to shn:Shewana3_4259)Predicted SEED Role
"IncF plasmid conjugative transfer pilus assembly protein TraK" in subsystem Type 4 secretion and conjugative transfer
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0L343 at UniProt or InterPro
Protein Sequence (405 amino acids)
>Shewana3_4259 putative periplasmic protein (RefSeq) (Shewanella sp. ANA-3) MIAPAFAADDDIYSLPTESVNPQRVPVLGTDFNQAEEKLQAELNSPYANQPLSIDTSKEI GTQTALSVSPNEQVLYQQPVTQPPSQQPMQQADHQQVPTYGGASPVNPTAISPANAGEVI SRRDDSMDYLRKQYKSHQVIALKAGGTTTLPISLSTTNRIATSFKNAKITTSVPSDAALV YGEQGFVYVTPGVNAGAIDLIVEEDGAPETAVSLYLVPLNVPPVLVELTVSYNASQRNAA LQAVSIYSENEAKELESAKQAERERITNNQPVADSHVDDVMTLLEVVAKAEVPAGYELLE GDTIPAEVRYPCDIRQMLPLYHEVKQRLIGSKLVVDIMEVRNDVNGLRSFRDEACMGPGR EDVMAVGVLDKATLGPRESTEVYILRDRSYFERQMKVPRRSRVGG