Protein Info for Shewana3_4201 in Shewanella sp. ANA-3

Annotation: ATPase (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 324 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF07724: AAA_2" amino acids 62 to 165 (104 residues), 28.2 bits, see alignment E=2.8e-10 PF00004: AAA" amino acids 66 to 138 (73 residues), 25.1 bits, see alignment E=3.1e-09 PF07728: AAA_5" amino acids 67 to 204 (138 residues), 79.6 bits, see alignment E=3.7e-26

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_4201)

Predicted SEED Role

"Nitric oxide reductase activation protein NorQ" in subsystem Denitrification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0L2Y6 at UniProt or InterPro

Protein Sequence (324 amino acids)

>Shewana3_4201 ATPase (RefSeq) (Shewanella sp. ANA-3)
MSIKAKQVSGATVFPLCPTLSGKMVAVFEGMANVPKVNPKYRPNERNLLIALTWMFGKSR
NMSLACYGETGTGKTEFVAFLAASLGLSLHRVSVSETMRPETLKGNIGIKNGETVFEESV
VVKAYREGGILLLDELDKGSFDLLASLHPILEGKPLAIEKTGEVVNPHPLFRVIATCQTP
GIADMSGRYGSISSDMDEAVKRRFLWIGFEYPAISVDTDILGDMTKLSYRIRLAMAKFAK
TVRDAMNTDAVNGNSQHCIQSALSTRVLVDWAVMWELLPDFTMQEVFEIVFTAASTPEER
LALNELGKLHLAEMFTQSLTAANA