Protein Info for Sama_3588 in Shewanella amazonensis SB2B

Annotation: putative ABC-type multidrug transport system, ATPase component (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 322 PF00005: ABC_tran" amino acids 33 to 176 (144 residues), 123.7 bits, see alignment E=8.8e-40 PF13304: AAA_21" amino acids 103 to 205 (103 residues), 41.8 bits, see alignment E=1.3e-14

Best Hits

KEGG orthology group: K09687, antibiotic transport system ATP-binding protein (inferred from 100% identity to saz:Sama_3588)

Predicted SEED Role

"ABC-type multidrug transport system, ATPase component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1SBN4 at UniProt or InterPro

Protein Sequence (322 amino acids)

>Sama_3588 putative ABC-type multidrug transport system, ATPase component (RefSeq) (Shewanella amazonensis SB2B)
MSEVLAPQTLTTAPLAIETRGMTRQFGALKAVDGVDLAIPRGSIYGFLGPNGCGKSTSIR
MLTGLLKPTSGEIRVLGEPLKGAEEKLRRRIGYMTQKFSLYENLTVLENLRFVARIYGLQ
GNKAKDRIEQLLSLYSLEGRESQMAGSMSGGQKQRLALAAATIHEPELLFLDEPTSAVDP
ENRREFWERLFDLSAKGCTILVSTHYMDEAERCHGLAILERGIKRADGSPKALMQAMGAR
VVEIGGQDLRVLKQQLLAEAPVLSAAQIGSRLRVLIRSQIDDPIAWLGQRVGTREMDEVR
PSLEDVFVTCTGQRAEGGAHVA