Protein Info for Sama_3559 in Shewanella amazonensis SB2B

Annotation: putative efflux pump component MtrF (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 535 transmembrane" amino acids 41 to 61 (21 residues), see Phobius details amino acids 96 to 97 (2 residues), see Phobius details amino acids 100 to 123 (24 residues), see Phobius details amino acids 144 to 175 (32 residues), see Phobius details amino acids 186 to 199 (14 residues), see Phobius details amino acids 233 to 251 (19 residues), see Phobius details amino acids 287 to 306 (20 residues), see Phobius details amino acids 325 to 345 (21 residues), see Phobius details amino acids 368 to 387 (20 residues), see Phobius details amino acids 402 to 427 (26 residues), see Phobius details amino acids 434 to 452 (19 residues), see Phobius details amino acids 464 to 484 (21 residues), see Phobius details amino acids 495 to 520 (26 residues), see Phobius details PF03806: ABG_transport" amino acids 25 to 533 (509 residues), 721.4 bits, see alignment E=4.6e-221 PF03606: DcuC" amino acids 145 to 483 (339 residues), 27.7 bits, see alignment E=1e-10

Best Hits

KEGG orthology group: K12942, aminobenzoyl-glutamate transport protein (inferred from 100% identity to saz:Sama_3559)

Predicted SEED Role

"Multidrug efflux pump component MtrF" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1SBK5 at UniProt or InterPro

Protein Sequence (535 amino acids)

>Sama_3559 putative efflux pump component MtrF (RefSeq) (Shewanella amazonensis SB2B)
MSTNSREAMASETPEDIAKSGWFVRFLNLVERLGNLLPHPITLFAMFCVAVVLLSGILGY
FELSVTDPRPEGASGRSADGIISVVSLMNAEGLRLIVSNLVTNFTGFTPLGTVLVALLGV
GIAERSGLLSAAMRALVIGRSRRLVTVTIVFAGIVSNTASELGYVVLIPMAAMIFHSLGR
HPLAGLAAAFAGVSGGYSANLLLGTIDPLLSGITEAAARMIDPEYVVGPEVNWYFMFAST
FVVSFMGAWVTEKIVEPKLGKYDPSEASVDLDGQAMEQVTDIERHGLKMAGLAVLVLGVI
LALTVVPEGAPLRHPDTGLVAGSPFLKGIVVFIFICFAIPGLVYGKVVGTMKKDTDVINA
MSHSMGTMGMYIVLVFFASQFVAFFKWTNLGAVLAVMGADALSAIGLTGPLLFLLFIAMC
GFINLMLGSASAQWAVTAPIFVPMLMLVGYAPETIQAAYRIGDSVTNLITPMMSYFGLIL
AVACRYKKDMGIGTLVATMLPYTLVFFVGWTSFFFLWVFGFGLPVGPGAATYYTP