Protein Info for Sama_3464 in Shewanella amazonensis SB2B

Annotation: IS1004 transposase (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 148 PF01797: Y1_Tnp" amino acids 11 to 130 (120 residues), 136.2 bits, see alignment E=3.1e-44

Best Hits

Swiss-Prot: 34% identical to T200_SALTI: Transposase for insertion sequence element IS200 (tnpA1) from Salmonella typhi

KEGG orthology group: None (inferred from 99% identity to saz:Sama_1561)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (148 amino acids)

>Sama_3464 IS1004 transposase (RefSeq) (Shewanella amazonensis SB2B)
MSRYESASHVFYRCQYHLVWTPKYRYKILKGNLGKELYRSIYVYCNMKKCRVVELNVQED
HVHLVVRTPPSLSVSDLMGFVKGRTAIRMFAKFPYLRKQKLWGNHFWQRGYFVDSVGANE
EIIRRYVRHQEKTAKEEEKRQIALGLEG