Protein Info for Sama_3452 in Shewanella amazonensis SB2B

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 233 transmembrane" amino acids 21 to 39 (19 residues), see Phobius details amino acids 59 to 79 (21 residues), see Phobius details amino acids 100 to 123 (24 residues), see Phobius details amino acids 129 to 152 (24 residues), see Phobius details amino acids 172 to 196 (25 residues), see Phobius details amino acids 204 to 226 (23 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_3452)

Predicted SEED Role

"FIG01058110: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1SB98 at UniProt or InterPro

Protein Sequence (233 amino acids)

>Sama_3452 hypothetical protein (RefSeq) (Shewanella amazonensis SB2B)
MSLSVILSEAYNFFRNHLGQLAALTIPLLLAQTGIQLWLGSEFAKVDVNNPQFGSPHFFA
MMMMLIIFSVLIAALTLYLQLRSEGHELSTGAVLKASLPFVPPLLLAGVFSGMAIAAPVI
IAAAFGPLWLIGLGISLYLFARLAYVNFMVVVERLTPLEAIKASFRFSSSIVSKTVALLL
LYVPLSLVGGTLSQLVAGVGLPLQLIVDAGFSFIALFVNVALFRLYMVNRTQA