Protein Info for Sama_3410 in Shewanella amazonensis SB2B

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 519 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 149 to 170 (22 residues), see Phobius details amino acids 194 to 220 (27 residues), see Phobius details amino acids 347 to 370 (24 residues), see Phobius details amino acids 389 to 408 (20 residues), see Phobius details amino acids 423 to 439 (17 residues), see Phobius details amino acids 446 to 466 (21 residues), see Phobius details amino acids 480 to 500 (21 residues), see Phobius details PF03929: PepSY_TM" amino acids 11 to 372 (362 residues), 217.1 bits, see alignment E=2.5e-68

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_3410)

Predicted SEED Role

"FIG138928: iron-regulated membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1SB56 at UniProt or InterPro

Protein Sequence (519 amino acids)

>Sama_3410 hypothetical protein (RefSeq) (Shewanella amazonensis SB2B)
MKETFFRTMTWLHTWAGLLVCWVLLLVFFAGTLSFFRHEISLYATPELHSQVLGSGVNTS
LEQNLRQGQAYLSARVPDAPDWYIALPQERQPYLAFQWSEPRDKQRPLIHSQPITLSGEL
ADEPRQTKGGDFFYRLHFDLHYISALTARYLVGICTMFMLIALITGVVIHKRIFKDFFSF
RPRKGSRSWLDAHNISAVMALPFHLTITYTGLITLMLMYMPWATLSVWNGDTKAMRQELS
PRFDQQKASGQPQDTLDLTLLLPQVNQLWGETAAVKNVRVQHPGDANARIFFTRDTGQDI
TDERVQLIFDGVTGKLLNPGAHHATGSQQLHDTLMALHTARFAGWPLRILGFVMGLMGCA
MIASGCLLWATKLREKRKNTAGLKLVEGLNLAVIMGLPLGTVLFFYANRLLPAPAPGRAE
DEVLAFFLGLLLCGVTALWRRDAAVWRALLGITALLALLMPVLNTLTSPQGLVGNLLSNQ
WVLVSADLLFIVLGITCLFARRKFVVPVRATMPAMERTA