Protein Info for Sama_3258 in Shewanella amazonensis SB2B
Annotation: putative outer membrane adhesin like protein (RefSeq)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
"T1SS secreted agglutinin RTX"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A1SAQ4 at UniProt or InterPro
Protein Sequence (4214 amino acids)
>Sama_3258 putative outer membrane adhesin like protein (RefSeq) (Shewanella amazonensis SB2B) MGSYITPKNGLLKSVNGQISMVAEGAEKSVSAGDAIPAGAVLWIKEGAQFELVLEDGTVI SESNTPTTANQPDVGAEQLDPNALNEIEALQAQIAAGDDPTADLPETAAGGQTGNEGGSG FVSLDRTGGETLASTGYDSTFDAQFPESTILEAQPIEPLLVTPLVITVDAPDNSTDTTPT ITGTTDAEPGSTVTILVTDSNGDTQTLTTTVNEDGTYSVDVVEPLPEGGYTADASVIDTT GNTGTATDVGDVVSPEVSITANQIDVEEGSTASFVVSLDEASNEDITVTFTYSGVAEDGT DFIGVASVVIPAGQTSVTININTIDDKLYEVSEDFTITISSVTGGNAVIGADNSASTNIV DEAVPGPEDTVTVTLNGPTAVAEGDNTGTYTVTLSDPAPAGSIVTLTYTYITADGNDIVE TVQAIIGADGVTATFTIATVNDDIFEPTESFSVSVSGVVTPDGTPVFENLDLTDATVTTD ILDNDLSASITLDANITADDIINSAEAGQTIPVTGVVGADVKVGDIVTLTVNGKEFTGAV YDDNGTLRFSIDVPGSDLAADADRVIDASVTATDDAGNSATATDTEGYGVDTDISASITL DADITADDIINAQEAGQDIPVTGIVGGDVKVGDIVTLTVNGKEFTGAVYDDNGTLRFSIN VPGADLVADEDHVIDASVTATDDAGNSATATDTEGYGVDTDISASITLDADITADDIINA QEAGQDIPVTGIVGGDVKVGDIVTLTVNGKEFTGAVYDDNGTLRFSINVPGADLVADEDH VIDASVTATDDAGNSATATDTEGYGVDTDISASITLDADITADDIINAQEAGQDIPVTGI VGGDVKVGDIVTLTVNGKEFTGAVYDDNGTLRFSINVPGADLVADEDHVIDASVTATDDA GNSATATDTEGYGVDTDISATIDLNPILVGDDNVINQAESEGSVTLSGTVGGDVKLGDTV TLTLDGNVIATVQVIDLGGGVLGFSTSVDAALLVGADVNSITASVTTTDDAGNTASASDT EGYGVDTEISATIDLNPILVGDDNVINQAESEGSVTLSGTVGGDVKLGDTVTLTLDGNVI ATVQVIDLGGGVLGFSTSVDAALLVGADVNSITASVTTTDDAGNSASASDTEGYGVDTEI SATIDLNPILVGDDNVINQAESEGSVTLSGTVGGDVKLGDTVTLTLDGNVIATVQVIDLG GGVLGFSTSVDAALLVGADVNSITASVTTTDDAGNTASASDTEGYGVDTEISATIDLDPI LVGDDNVINQVESEGSVTLSGTVGGDVKLGDTVTLTLDGNVIATVQVIDLGGGVLGFSTS VDAALLVGADVNSITASVTTTDDAGNTASASDTEGYGVDTEISATIDLNPILVGDDNVIN QAESEGSVTLSGTVGGDVKLGDTVTLTLDGNVIATVQVIDLGGGVLGFSTSVDAALLVGA DVNSITASVTTTDDAGNTASASDTEGYGVDTEISATIDLDPILVGDDNVINQVESEGSVT LSGTVGGDVKLGDTVTLTLDGNVIATVQVIDLGGGVLGFSTSVDAALLVGADVNSITASV TTTDDAGNTASASDTEGYGVDTEISATIDLNPILVGDDNVINQAESEGSVTLSGTVGGDV KLGDTVTLTLDGNVIATVQVIDLGGGVLGFSTSVDAALLVGADVNSITASVTTTDDAGNT ASASDTEGYGVDTEISATIDLNPILVGDDNVINQAESEGSVTLSGTVGGDVKLGDTVTLT LDGNVIATVQVIDLGGGVLGFSTSVDAALLVGADVNSITASVTTTDDAGNTASASDTEGY GVDTEISATIDLNPILVGDDNVINQAESEGSVTLSGTVGGDVKLGDTVTLTLDGNVIATV QVIDLGGVLGFSTSVDAALLVGADVNSITASVTTTDDAGNTASASDTEGYGVDTTAPAVT ITITEDTNNDGLLSIAELDGQVNYLVQLGAGTAVDDTLVITDQDGNVLFNGLVTQAMLDN GLALAVDAPADGDTLTLTATVTDPAGNSDSDSDSVTIDTTAPAVTITITEDTNNDGLLSI AELDGQVNYLVQLGAGTAVDDTLVITDQDGNVLFNGLVTQAMLDNGLALAVDAPADGDTL TLTATVTDPAGNSDSDSDSVTIDTTAPAVTITITEDTNNDGLLSIAELDGQVNYLVQLGA GTAVDDTLVITDQDGNVLFNGLVTQAMLDNGLALAVDAPADGDTLTLTATVTDPAGNSDS DSDSVTIDTTAPAVTITITEDTNNDGLLSIAELDGQVNYLVQLGAGTAVDDTLVITDQDG NVLFNGLVTQAMLDNGLALAVDAPADGDTLTLTATVTDPAGNSDSDSDSVTIDTTAPAVT ITITEDTNNDGLLSIAELDGQVNYLVQLGAGTAVDDTLVITDQDGNVLFNGLVTQAMLDN GLALAVDAPADGDTLTLTATVTDPAGNSDSDSDSVTIDTTAPAVTITITEDTNNDGLLSI AELDGQVNYLVQLGAGTAVDDTLVITDQDGNVLFNGLVTQAMLDNGLALAVDAPADGDTL TLTATVTDPAGNSDSDSDSVTIDTTAPAVTITITEDTNNDGLLSIAELDGQVNYLVQLGA GTAVDDTLVITDQDGNVLFNGLVTQAMLDNGLALAVDAPADGGTLTLTATVTDPAGNSDS DSDSVTIDTTAPAVTITITEDTNNDGLLSIAELDGQVNYLVQLGAGTAVDDTLVITDQDG NVLFNGLVTQAMLDNGLALAVDAPADGDTLTLTATVTDPAGNSDSDSDSVTIDTTAPAVT ITITEDTNNDGLLSIAELDGQVNYLVQLGAGTAVDDTLVITDQDGNVLFNGLVTQAMLDN GLALAVDAPADGDTLTLTATVTDPAGNSDSDSDSVTVDTSIAAPTVWIVDDGTPGDGLLT QGEISSNGPGVQLQANVSHADLLEGGFVTLTVTIGNAQPQEYELELVNGVLQFTNGDPAP DFDYNNGVITWTENAPDAGQSITVTVTQTDLAGNESAQDSDTAQVFAPGNNEMTVNESDL RDNVPNVVSQQISFTAGSETLTQFRFGDVNSIQAATNLATGVSIAWALALDGSLVGSIGG VPVIKLTLTDTDPISANTTGSISVNVELLDNIKQVNGANDINLSSLIEGIVIEAVGANNS VISATLDLTIDDDLVEASATDSSGLNAADTQISGTVTVAGADGNDNESADQYSADLSVNI TGWSESSTFADSGLMTSGKAIYYYVDPNDTSVMIAYTSSTAAEWGAVGAIQTKIFTLTLD PNSGEYVLDLETPITKITTTNADLTGNIPGGNDADLFVMLNGAVKGEPESGDVVLCTITA TDAGGVSTVNTSPNGIGVGTGKDIGSGETLTLDFGFPVTNFTGISLSYNNGNPYTGVFTI NIVGKDAFGNDLVKTFIATPATLANLIASEGFAEFTKIELSTAAGGQDFNLKNFTANSLS VDPLGTVLNFNVAITDSDGDTDSSNPFTVTLNVPNTLNAVTPAAFTSLAEAKLVSDTMDA DTDTLVFKAGSSDVNNVSFSADVSDIQVEGIRQPMSWRIEGGVLIGSMPGRGDLLKLTLD WNAIEAGEQGSVVVEAELLGKLPHNIDYDSLTVTGIKVVATDDSGDTAKADVTVTVADSQ HIAVDDDNQVDVLIDAFEVRDITARWTDWTAESEEKSNVTTSDGPDDDNGHDIIRWGDVG NGQPRSGYNFDENTNIQVGDVGLNQNIVLGTFTHVNQPINGYSSITEATLEVTLMINGVA AKVTLEFNHNETGGYNNPPDIVTVANTSSEFVYDGARYTLKVMGFLDSNGDVVTSIKTAE GASTSFPLVVQLIPGDGFELPLIGGNVLHNDIQGADGDMEIYGVSHSGNNATESNGTFVI QGTYGTLTLYGNGSYSYQVTTVGSLIPDNAVDTFSYTIEDSDGDLSTAELNINLNAVEEL PIVYEGTQGVDSFLLTNSTSGKGLFAVSSSGYDAVASTESANVINLDTALHIKAGDSNDY VDLGISRTDNTVETGSSLPNVPSQMSQDEVLSSKFMSARDILDNDGKLKQNVLEEVQPKT DTVNLGVGDDTVYGGEGSQMVYGGAGNDLLIGGEGIDGLRGGEGNDTIIGGLGDDVLRGD GGADTFVWRAGETGTDHIIDFNINEDKLDLSDLLQGEENGNLEDYLSFSFERGSTTIEID ANRDGTVDQRIVLDGVDLADEYGLASTDESGIINGLLGNGTGPLIVDTQADTGAAQAVGR ILSLDEDHKTELMP