Protein Info for Sama_3241 in Shewanella amazonensis SB2B

Annotation: phosphoglycerate transport regulatory protein PgtC, putative (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 419 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF13531: SBP_bac_11" amino acids 38 to 281 (244 residues), 78.7 bits, see alignment E=1.2e-25 PF13416: SBP_bac_8" amino acids 42 to 282 (241 residues), 43 bits, see alignment E=1.1e-14 PF01547: SBP_bac_1" amino acids 69 to 278 (210 residues), 46.3 bits, see alignment E=1.2e-15 PF13343: SBP_bac_6" amino acids 76 to 291 (216 residues), 76.3 bits, see alignment E=5.3e-25

Best Hits

KEGG orthology group: K08478, phosphoglycerate transport regulatory protein PgtC (inferred from 100% identity to saz:Sama_3241)

Predicted SEED Role

"Phosphoglycerate transport regulatory protein PgtC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1SAN7 at UniProt or InterPro

Protein Sequence (419 amino acids)

>Sama_3241 phosphoglycerate transport regulatory protein PgtC, putative (RefSeq) (Shewanella amazonensis SB2B)
MTQKKLLALLLMLWLGWPNTGQAKENCLVILTSFSELPFKGLVDKFSAKEQCEVRVIYRR
TLPAIRLLTDENQPRIDLVVSSSPTLFQTLHQQHLLAPLGELPAAPAWLKRHSLPASDYV
LPVAYSGIGLMFNRDYLNKHGLPQPRSWQDLAQPGFNGHVMMSSPSHSGTTHMMVENILQ
SEGWDAGWGLLMRIGGNLASLSARSFGVSDAISRGLVGAGPVIDNYASVARSHFDYVGFT
YLPDTVILPTYCGLTAKAEHAAKAREFLSFLLSPEGQAILTEPEFAKTPLSDGKLANSTA
FVIEKQQLFIRNNVIKALFEQAIAQQLPKLRYTWLAIIKAQGAMKDTPKNHEVLTQAIAL
ASRVPISEAEAMSPDLQTVFADYEQQPSAQMERTMQDWRMQVAQQLEQAMALVRTLEYP