Protein Info for Sama_3098 in Shewanella amazonensis SB2B

Annotation: GGDEF family protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 638 PF01590: GAF" amino acids 32 to 147 (116 residues), 38 bits, see alignment E=4.7e-13 PF13185: GAF_2" amino acids 32 to 153 (122 residues), 32.7 bits, see alignment E=1.7e-11 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 211 to 369 (159 residues), 78.6 bits, see alignment E=2.2e-26 PF00990: GGDEF" amino acids 217 to 368 (152 residues), 106.5 bits, see alignment E=2.4e-34 PF00563: EAL" amino acids 392 to 625 (234 residues), 246.3 bits, see alignment E=5.5e-77

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_3098)

Predicted SEED Role

"GGDEF family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1SA94 at UniProt or InterPro

Protein Sequence (638 amino acids)

>Sama_3098 GGDEF family protein (RefSeq) (Shewanella amazonensis SB2B)
MTSTPSGINTLPMPQINTKTISVPDAMLCGWQEIVDLVADITECPSALIMRIHEDDIEVF
ASSRSAGNPYVPHARDALGHGLYCETVIRERQQLEVPNALKDPEWANNPDIKLGMICYCG
LPIFWPDNTPFGTICILDNKERHFNDRVHALLGRFQSALEGHLQILYHKSELKVLNEELE
HKVQERTQRLAELSARLLKEIEQRTAAEGHLEFHRTFDPLTHLPNRATLTERLQTLLPKL
KKDEHLTLIYFGLRNFKSVNDSYGYLTGDSILVSLSQRLSLKLPDNWLLARIAGSEFVLA
ALHNASTEMTEQVIARVLSDCSVPFTVNTNSITVQTNLGVAIAPVDATDSVSLLQRASAA
MSIAKKEGAVVSFFGQETQKAAHERLLLESHLLDALHQGELAVYFQPLVSVRDKKRLVGA
EALLRWHSPELGNVGPDRFIPLAESNGQIIEIGNFVLHEAMKHAAHWCKRSNNPFKIAIN
ISPLQFRERQFVEHIEDLLDLYELPPGTLELEITEGILLQDEHHARASLARLRHLGVQIS
LDDFGTGYSSLSYLQKYAFDTLKIDRSFISNLEFNEQNRELTRAIIAMAHKLKLNVVAEG
VENAFQEAFIQAEECDFAQGYLYGKAIPAEKFAEKFTH