Protein Info for Sama_3050 in Shewanella amazonensis SB2B

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 323 transmembrane" amino acids 7 to 28 (22 residues), see Phobius details PF10095: DUF2333" amino acids 3 to 323 (321 residues), 485.1 bits, see alignment E=4.9e-150

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_3050)

Predicted SEED Role

"FIG014328: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1SA46 at UniProt or InterPro

Protein Sequence (323 amino acids)

>Sama_3050 hypothetical protein (RefSeq) (Shewanella amazonensis SB2B)
MQVTWKKVAGVAAVIVVIMYGVSVWWSVEPDVLEPEVLNAENGQQVVGYATTSSLINTVE
ALLNKQGGWLSNDTTPPSVFMDNMPAFEFGALEQARDLALVMRKEFSRSQSQSTADNDLL
EAHSKLNIDHTSWLVPSAESEYSDAVKLLKLYRARIADTSNRDAQFYARADNLNEWLKEV
QKRLGSMSQRLSASVGQERLNTDLAGDNSARQSTPNLAAQQIKTSWWQIDDVFYETRGSC
WALLNFMKAVEVDFADVLKKKNAEVSLKQIIRELESTQQTVWSPLVLNGSGFGYVANHSL
VMANYVSRANAALIDLTNLLSQG