Protein Info for Sama_2955 in Shewanella amazonensis SB2B

Annotation: ABC transporter, ATP-binding protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 PF00005: ABC_tran" amino acids 24 to 169 (146 residues), 130.5 bits, see alignment E=6.6e-42

Best Hits

Swiss-Prot: 42% identical to LOLD_RHOFT: Lipoprotein-releasing system ATP-binding protein LolD (lolD) from Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118)

KEGG orthology group: K02003, (no description) (inferred from 100% identity to saz:Sama_2955)

Predicted SEED Role

"AttE component of AttEFGH ABC transport system"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S9V1 at UniProt or InterPro

Protein Sequence (250 amino acids)

>Sama_2955 ABC transporter, ATP-binding protein (RefSeq) (Shewanella amazonensis SB2B)
MTPIVAMQEISKSFQDGGERHRVLDNLTLDIHPGETVALTGPSGSGKSTLLNLIAGFDQP
DDGHIRLLGRPSKHFSASDWDRFRRSELGMVFQQFNLLEPLNVQANIHFPLALNGKPWDD
WCHTLTSRLGLTELLSRPVDSLSGGQQQRVAIARALSQRPPLLLADEPTGNLDEHSGDEV
MALLTSLARESNTAILMVTHSERCAAFMQRRWHLCNGQIAETRSEIASPLLGQTTATDGS
LPESSQQVQG