Protein Info for Sama_2767 in Shewanella amazonensis SB2B

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 140 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF03724: META" amino acids 36 to 136 (101 residues), 84.2 bits, see alignment E=3.1e-28

Best Hits

KEGG orthology group: K03668, heat shock protein HslJ (inferred from 100% identity to saz:Sama_2767)

Predicted SEED Role

"Protein of unknown function DUF306"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S9B3 at UniProt or InterPro

Protein Sequence (140 amino acids)

>Sama_2767 hypothetical protein (RefSeq) (Shewanella amazonensis SB2B)
METRMIKKFALLAGALTLVGCQSSPPLDAVEVNLLGSWHIEQVMDRPVIDYSPAKLVFEE
GNKLLGNNSCNNFFGSFELQGHQLLLTPSGTTRKACVDALMDQEARVADALPKVRKLADD
QGKLRLLDSEGQVLLILSRL