Protein Info for Sama_2755 in Shewanella amazonensis SB2B
Annotation: hypothetical protein (RefSeq)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 57% identical to SELO_RHOS1: Protein adenylyltransferase SelO (selO) from Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9)
KEGG orthology group: None (inferred from 100% identity to saz:Sama_2755)Predicted SEED Role
"Selenoprotein O and cysteine-containing homologs"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A1S9A1 at UniProt or InterPro
Protein Sequence (497 amino acids)
>Sama_2755 hypothetical protein (RefSeq) (Shewanella amazonensis SB2B) MSKVFSPFQFDNSFVRSMEGFFEPWQGARVPAPAMVCFNQQLADELGMDADAMEDSRLAA FFCGMLTAEGSEPVAMAYAGHQFGGFSPRLGDGRALLLGEVKDIHGRRRDLHLKGSGRTN FSRGGDGKAVLGPVLREYLMGEAMHALGIPTTRALAAVTTGEDIYRDGIKPGAVLARVAS SHIRVGTFEYAAARGDHEGLRELVNYSLKRHYPELEDEQTPALALLNSVSRAQAKLVAKW MGVGFIHGVMNTDNVTISGETIDYGPCAFMDTYDARTVFSSIDHEGRYAYGNQPGIARWN LARFAEALLPLLAEDESEALAHAQTVLDGFAEVYTNEWLAVFAAKFGLKTAQDGDLELFM DFLTLLGELKLDFTRSFRALANSLGDTAAAGIEALTADSARFAPWLTRWHERLGREYASQ SDFASDARALMQGVNPVYIPRNHLLQGALDSAEAGDMAPFERLLEVVCRPYEELAGYGAY ALGAPEDFGPFRTFCGT