Protein Info for Sama_2744 in Shewanella amazonensis SB2B

Annotation: AcrB/AcrD/AcrF family protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1067 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 333 to 352 (20 residues), see Phobius details amino acids 358 to 376 (19 residues), see Phobius details amino acids 383 to 407 (25 residues), see Phobius details amino acids 432 to 453 (22 residues), see Phobius details amino acids 459 to 477 (19 residues), see Phobius details amino acids 533 to 554 (22 residues), see Phobius details amino acids 860 to 880 (21 residues), see Phobius details amino acids 890 to 910 (21 residues), see Phobius details amino acids 916 to 940 (25 residues), see Phobius details amino acids 960 to 981 (22 residues), see Phobius details amino acids 993 to 1019 (27 residues), see Phobius details PF00873: ACR_tran" amino acids 8 to 1019 (1012 residues), 582.3 bits, see alignment E=9.1e-179

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_2744)

Predicted SEED Role

"Acriflavin resistance protein" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S990 at UniProt or InterPro

Protein Sequence (1067 amino acids)

>Sama_2744 AcrB/AcrD/AcrF family protein (RefSeq) (Shewanella amazonensis SB2B)
MDTHKGIIAWFARNSVAANLLMIVLLVGGLFSTQLINKEIFPSFELNLLRISVAYPGAAP
QEIEEGINIKIEEAIQDVIGIKKLTSVASDGVGSITIEVENGVDAKTVLDEAKLRIDAIS
TFPANIEKPNIYQIKPENNVIWLSVYGDINAHEMKELAKNIRDEVAALPSVTRAQVAGAR
NYEIGIEVSENKLREYGLTFTQVAMAVQNSSLDLPGGAIRAKDGDILLRTKGQAYTGEDF
SSIVVATSKDGSRIMLPDVATIKDDFEERLDYTRFNGKPAVIVEVLSVKDQDAVAIAKDV
KDYIAERKLSLPAGAELDYWGDLTHYLNGRLNMMLSNMTMGALLVFVILALFLDLKLAFW
VMVGIPVCFLGTLLLMPVEPFALSINMLTLFAFILVLGILVDDAIVIGESVHTEVERHGH
NMDNVIRGAQKVAMPATFGVLTTIAAFIPMLMVDGPMGIIWKSIGMVVILCLAFSLVESK
LILPAHLAHMKPNTKEPSGPLGRMKLRFNERVAHFIHHSYKAFLERAIHNRYNWLAGFTG
VLILSIALVASGKVRWVFFPSIPSDFVQVNLQMEEGSSEDNTLKALQQIEDALYRMNGEM
EQKYGEPVVKHSFFNMNSRTSAFIFAELTKGEDRELDGNAITDAWRDALPEMVGVKKLSM
NATTNDAGGDVAFRLSSNDLEQLSLAAKELKTKLASYEGLYDIADNYSSGSHEIRLKIRP
EAEALGLTLSDLARQVRYGFYGYEAQRILRNKEEVKVMVRYPLEQRRTVGHLENMLIRTP
DGSAVPFANVAEIEVGDSYSAITRVDGRRAITITAAANKDKVEPGKVVAEIQKDFMPVLK
QKYPHIDTSLDGQSQEEADAIWGLLQGLFFALFTIYALMAIPLKSYSQPMIIMSVIPFGM
IGAIIGHLLLGLSLSVLSLCGIIALAGVVVNDSLILVDFVNRARAQGFALREAVVNAGCF
RFRAIILTSLTTFFGLVPIILERSLQAQIVIPMATSLAFGILFSTVVTLILVPLLYVILA
DFASIGRRLFNWWWQPGQGHNEHGAAAGQGTEQGASLTQSLEGAKHD