Protein Info for Sama_2417 in Shewanella amazonensis SB2B

Annotation: TPR domain-containing protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 716 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 475 to 494 (20 residues), see Phobius details PF13424: TPR_12" amino acids 281 to 346 (66 residues), 35.6 bits, see alignment E=8.6e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_2417)

Predicted SEED Role

"FIG00920775: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S8B5 at UniProt or InterPro

Protein Sequence (716 amino acids)

>Sama_2417 TPR domain-containing protein (RefSeq) (Shewanella amazonensis SB2B)
MRLILLAFSLLFLCLSHFALARDLKSEEVELRESPQQIFDRVNASLPLPPSVLETRAAFS
AYAKEQGLSVEELAELLALIARANLQPNVENANKAHDLELIVSSLEKSAATPYEKAMALM
LRGRMLGRLELKFEEAAGYFIQALTQDQESQSLASQVLRLNLHEQLGGMYLMINQDVTAL
VHLQKFRDQAYQLRDDYLIANAEAELGKYYNKKQELTKALQHYSEALRLSDQEHHPFQRA
FLQMQLAKVYRDLGHRSEALSHAHDAAETFGQIGSENFLSATLTVIAMTHAGNNEWNKAI
DYYLNALQVDRRSGNYSALARNFHNLGEAYGELGELELSLNYLQQANQMFAERKMKHFLV
YNEALIAKTFCKLSQWQLCREHADMAYDLARQQSLKDVLIESLSQKVIAAKALADWQGAL
DFQQHIISLQQEEAAPQVAANPSTSALTEQKLKLDLHQKNEQLQESHAHLRERTILLAGS
LMLVLTLATMVWHYRRSRWELKAKIASLKHKLPLDGATAHPGLPALRSAIKKPKTKAVAL
LRIASLCESDIRLGHKRMVEAAQETVNAIEKLPGIKTYVIRPGLIGLSFDEPIKAADALL
FNLRNQVPHIEGRLQLSFINLPLLPNPELLIPDNNHIEVLELAMAGALSLDEDKDLYVTL
WALDFTPSAVFGHPLYLHLEKSIGRGLIRVETNGDKDKIVWPQWQTPVPADDPLIN