Protein Info for Sama_2392 in Shewanella amazonensis SB2B

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 484 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 85 to 112 (28 residues), see Phobius details amino acids 124 to 141 (18 residues), see Phobius details amino acids 147 to 173 (27 residues), see Phobius details amino acids 180 to 199 (20 residues), see Phobius details amino acids 205 to 224 (20 residues), see Phobius details amino acids 265 to 285 (21 residues), see Phobius details amino acids 288 to 313 (26 residues), see Phobius details amino acids 331 to 349 (19 residues), see Phobius details amino acids 377 to 402 (26 residues), see Phobius details amino acids 409 to 428 (20 residues), see Phobius details amino acids 434 to 453 (20 residues), see Phobius details amino acids 463 to 483 (21 residues), see Phobius details PF03606: DcuC" amino acids 8 to 479 (472 residues), 359 bits, see alignment E=1.7e-111

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_2392)

Predicted SEED Role

"Arginine/ornithine antiporter ArcD" in subsystem Arginine Deiminase Pathway or Arginine and Ornithine Degradation or Polyamine Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S890 at UniProt or InterPro

Protein Sequence (484 amino acids)

>Sama_2392 hypothetical protein (RefSeq) (Shewanella amazonensis SB2B)
MSLSKREMPDAFIILMLMMLLAWGLTFIVPAGQFMWVTEQGIRLENFSLQANEGLGSALF
SANGTPGLLNSAFDGLTSGGRDSSAVGVVAFILIVGGAFGVLLASGAVHQALMLLIARLK
EREALLLPVLFVVFSLSGAVYGMSEEAIAFCLLLMPLFSALGYHPAVVVLVTYVATQVGF
ATSWMNPFSVAIAQGIAGLPLMSGAWLRALCWGIFTLCALVYTLRFAKHTRRQTLALAAA
PTADASVTQSLMAEPKPKQTSLSKVNVAILLILLLTLVWVIWGVVAGGYYIAQIASQFFA
MAMAIGLLLWLSGTMTLNQVSGAFQRGAAELLPAALIVGFAKGLVILLGGDNPSAPSVLN
TLLYSAGGSIGHLPDWLSAQMMLVFQSVFNVFVSSGSGQAALTMPLMSPLAELAGLSRQL
AVLCFQLGDGLTNLIIPTSASLMGCLGVVKISFGQWLKLIWRLQVLLMTLASAAVGIAVY
TGYS